Rmu_sc0033013.1_g000001

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033013.1
OG0000527
Physical Location & Seq
Forward (+)
441 .. 2362
1922 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033013.1_g000001.1.cds

Sequence Viewer

Length: 1164 bp
atgatgatgcgattggatttcagccctggggaagatgttgaagtgaacctacacaaagaacgtgtatggtatgcttggataccggcaatttatgttggtccattagggggcaattctttcctggtccgttataagggtgcgaataatggtcatgaaaatggttttgttaaagttgtatcggactatcagattcgacctcttcctccgcagcaagaggaaagagcttttgaattgttgggaatggtggatgcatacctagatatgtgttggtgggttggagacattacaaaagttcttacaggggaaaggtatgttgtcacattaagattcacaaagcaggagaaggaattcagatcgtcagacctgaggcaccactcagaatggattggtagcaaatgggtgtctgaccctaaggcacttgaaaattctattgtcaatgaagaacgattaagatatgcaagaaacaattacagaaaatccgaagaaaaaacaccttgtcatactaagtctcaaatgaagcagttgacttgtcttgtgaagaaatcaccttacggaaataccattaagaaactcaaattatctgagctttctaatgatggtgcaacattttcaagttcaactccttcaaagaagttaaaaggggaacgctcagaagactccttatctctgtcagcattatttggcagggcaaaatcagttaaaacatccaacagaaaagggccttttgaagatggagagaagtccgagcaacaacttgtcgggcaactggatggtgaagtaaccactcccgtaaaaagaagggttggacaacgaaaatcacaagctgatagcccttcccctggtgttagacagggtacaaaggctagacgaccaaaattgcatgtcaagaagagaagtggaatttacaaagcatatgaacaaaatcttgaagatgagcatgtaattaacggaattgaatcttctgggatcggttcggagaatgaaataatggggggatcaaaggctggaagctcatgtctgctccctatggaggataaccaacaacataatgaagatggagcaagcagtggaataaaactgaagagaaaactgcctatgttagctgttgaacactcaaaagatccaacaacaggtaatatcccaaagctacaaaatcctcgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

387

Amino Acids

43.55

Weight (kDa)

9.37

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 369
AciI CCGC 1 cut(s) 206
AclWI GGATC 3 cut(s) 974, 1003, 1115
AcsI RAATTY 3 cut(s) 347, 424, 900
AcuI CTGAAG 1 cut(s) 1100
AfaI GTAC 1 cut(s) 856
AfiI CCNNNNNNNGG 5 cut(s) 107, 133, 839, 1030, 1130
AflIII ACRYGT 1 cut(s) 61
AjnI CCWGG 3 cut(s) 25, 120, 838
AluBI AGCT 6 cut(s) 224, 586, 824, 1011, 1103, 1147
AluI AGCT 6 cut(s) 224, 586, 824, 1011, 1103, 1147
Alw26I GTCTC 2 cut(s) 273, 513
AlwI GGATC 3 cut(s) 974, 1003, 1115
AoxI GGCC 1 cut(s) 719
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 3 cut(s) 347, 424, 900
Asp700I GAANNNNTTC 1 cut(s) 347
AspS9I GGNCC 3 cut(s) 98, 124, 719
AsuHPI GGTGA 2 cut(s) 537, 785
AvaII GGWCC 2 cut(s) 98, 124
AxyI CCTNAGG 2 cut(s) 365, 411
BanI GGYRCC 1 cut(s) 369
BarI GAAGNNNNNNTAC 2 cut(s) 33, 65
BbsI GAAGAC 1 cut(s) 660
BbvI GCAGC 1 cut(s) 220
BccI CCATC 4 cut(s) 590, 725, 764, 1049
BciT130I CCWGG 3 cut(s) 27, 122, 840
BciVI GTATCC 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 273, 513
BfaI CTAG 2 cut(s) 257, 864
BfuI GTATCC 1 cut(s) 72
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme1390I CCNGG 3 cut(s) 27, 122, 840
Bme18I GGWCC 2 cut(s) 98, 124
BmgT120I GGNCC 3 cut(s) 98, 124, 719
BmiI GGNNCC 1 cut(s) 371
BmrFI CCNGG 3 cut(s) 27, 122, 840
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 660
BsaJI CCNNGG 3 cut(s) 25, 26, 838
Bsc4I CCNNNNNNNGG 5 cut(s) 107, 133, 839, 1030, 1130
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 771
Bse21I CCTNAGG 2 cut(s) 365, 411
BseBI CCWGG 3 cut(s) 27, 122, 840
BseDI CCNNGG 3 cut(s) 25, 26, 838
BseGI GGATG 3 cut(s) 253, 704, 775
BseLI CCNNNNNNNGG 5 cut(s) 107, 133, 839, 1030, 1130
BseMII CTCAG 4 cut(s) 356, 390, 573, 663
BseNI ACTGG 1 cut(s) 771
BseXI GCAGC 1 cut(s) 220
BshFI GGCC 1 cut(s) 721
BshNI GGYRCC 1 cut(s) 369
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 5 cut(s) 107, 133, 839, 1030, 1130
BsmAI GTCTC 2 cut(s) 273, 513
BsnI GGCC 1 cut(s) 721
Bsp143I GATC 4 cut(s) 353, 966, 995, 1120
BspACI CCGC 1 cut(s) 206
BspANI GGCC 1 cut(s) 721
BspCNI CTCAG 4 cut(s) 357, 389, 574, 662
BspHI TCATGA 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 371
BspPI GGATC 3 cut(s) 974, 1003, 1115
BspT107I GGYRCC 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 771
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 3 cut(s) 25, 26, 838
BssMI GATC 4 cut(s) 353, 966, 995, 1120
Bst2UI CCWGG 3 cut(s) 27, 122, 840
Bst6I CTCTTC 3 cut(s) 204, 884, 1076
BstC8I GCNNGC 1 cut(s) 1063
BstDEI CTNAG 6 cut(s) 365, 376, 411, 504, 582, 649
BstF5I GGATG 3 cut(s) 253, 704, 775
BstKTI GATC 4 cut(s) 356, 969, 998, 1123
BstMAI GTCTC 2 cut(s) 273, 513
BstMBI GATC 4 cut(s) 353, 966, 995, 1120
BstNI CCWGG 3 cut(s) 27, 122, 840
BstNSI RCATGY 2 cut(s) 884, 941
BstSCI CCNGG 3 cut(s) 25, 120, 838
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 660
BstX2I RGATCY 1 cut(s) 1120
BstYI RGATCY 1 cut(s) 1120
Bsu36I CCTNAGG 2 cut(s) 365, 411
BsuI GTATCC 1 cut(s) 72
BsuRI GGCC 1 cut(s) 721
BtsCI GGATG 3 cut(s) 253, 704, 775
BtsI GCAGTG 1 cut(s) 1072
BtsIMutI CAGTG 1 cut(s) 1072
Cac8I GCNNGC 1 cut(s) 1063
CciI TCATGA 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 82
Cfr13I GGNCC 3 cut(s) 98, 124, 719
Csp6I GTAC 1 cut(s) 855
CviAII CATG 4 cut(s) 152, 881, 938, 1014
CviQI GTAC 1 cut(s) 855
DdeI CTNAG 6 cut(s) 365, 376, 411, 504, 582, 649
DpnI GATC 4 cut(s) 355, 968, 997, 1122
DpnII GATC 4 cut(s) 353, 966, 995, 1120
Eam1104I CTCTTC 3 cut(s) 204, 884, 1076
EarI CTCTTC 3 cut(s) 204, 884, 1076
Eco47I GGWCC 2 cut(s) 98, 124
Eco57I CTGAAG 1 cut(s) 1100
Eco81I CCTNAGG 2 cut(s) 365, 411
EcoO109I RGGNCCY 1 cut(s) 719
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 3 cut(s) 25, 120, 838
EcoT22I ATGCAT 1 cut(s) 253
FaeI CATG 4 cut(s) 155, 884, 941, 1017
FatI CATG 4 cut(s) 151, 880, 937, 1013
FauNDI CATATG 1 cut(s) 913
Fnu4HI GCNGC 1 cut(s) 209
FokI GGATG 3 cut(s) 260, 691, 782
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 2 cut(s) 257, 864
GluI GCNGC 1 cut(s) 209
HaeIII GGCC 1 cut(s) 721
HapII CCGG 1 cut(s) 83
Hin1II CATG 4 cut(s) 155, 884, 941, 1017
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HinfI GANTC 4 cut(s) 190, 327, 656, 956
HpaII CCGG 1 cut(s) 83
HphI GGTGA 2 cut(s) 537, 785
Hpy166II GTNNAC 2 cut(s) 46, 525
Hpy188III TCNNGA 3 cut(s) 152, 886, 926
Hpy8I GTNNAC 2 cut(s) 46, 525
HpyAV CCTTC 4 cut(s) 337, 633, 792, 843
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 4 cut(s) 251, 458, 602, 880
HpyF3I CTNAG 6 cut(s) 365, 376, 411, 504, 582, 649
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 4 cut(s) 155, 884, 941, 1017
Kzo9I GATC 4 cut(s) 353, 966, 995, 1120
LmnI GCTCC 2 cut(s) 1026, 1058
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 238
MaeI CTAG 2 cut(s) 257, 864
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 2 cut(s) 316, 778
MalI GATC 4 cut(s) 355, 968, 997, 1122
MboI GATC 4 cut(s) 353, 966, 995, 1120
MflI RGATCY 1 cut(s) 1120
MlyI GAGTC 1 cut(s) 650
MmeI TCCRAC 4 cut(s) 256, 732, 784, 1148
MnlI CCTC 5 cut(s) 207, 208, 213, 360, 1024
Mph1103I ATGCAT 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 347
MseI TTAA 7 cut(s) 168, 323, 449, 564, 635, 699, 945
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 3 cut(s) 27, 122, 840
MvaI CCWGG 3 cut(s) 27, 122, 840
NdeI CATATG 1 cut(s) 913
NdeII GATC 4 cut(s) 353, 966, 995, 1120
NlaIII CATG 4 cut(s) 155, 884, 941, 1017
NlaIV GGNNCC 1 cut(s) 371
NmuCI GTSAC 1 cut(s) 316
NsiI ATGCAT 1 cut(s) 253
NspI RCATGY 2 cut(s) 884, 941
PagI TCATGA 1 cut(s) 151
PasI CCCWGGG 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 347
PfeI GAWTC 3 cut(s) 190, 327, 956
PkrI GCNGC 1 cut(s) 210
PleI GAGTC 1 cut(s) 650
PpsI GAGTC 1 cut(s) 650
PsiI TTATAA 1 cut(s) 132
Psp6I CCWGG 3 cut(s) 25, 120, 838
PspGI CCWGG 3 cut(s) 25, 120, 838
PspN4I GGNNCC 1 cut(s) 371
PspPI GGNCC 3 cut(s) 98, 124, 719
PsuI RGATCY 1 cut(s) 1120
RsaI GTAC 1 cut(s) 856
RsaNI GTAC 1 cut(s) 855
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 7 cut(s) 168, 323, 449, 564, 635, 699, 945
SatI GCNGC 1 cut(s) 209
Sau3AI GATC 4 cut(s) 353, 966, 995, 1120
Sau96I GGNCC 3 cut(s) 98, 124, 719
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 3 cut(s) 27, 122, 840
SfaNI GCATC 1 cut(s) 238
SinI GGWCC 2 cut(s) 98, 124
SmiMI CAYNNNNRTG 1 cut(s) 156
SsiI CCGC 1 cut(s) 206
SspMI CTAG 2 cut(s) 257, 864
StyD4I CCNGG 3 cut(s) 25, 120, 838
TaiI ACGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 193
TfiI GAWTC 3 cut(s) 190, 327, 956
Tru1I TTAA 7 cut(s) 168, 323, 449, 564, 635, 699, 945
Tru9I TTAA 7 cut(s) 168, 323, 449, 564, 635, 699, 945
TscAI CASTG 1 cut(s) 1072
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 6 cut(s) 168, 453, 530, 930, 996, 1065
TspGWI ACGGA 3 cut(s) 116, 567, 963
TspRI CASTG 1 cut(s) 1072
VpaK11BI GGWCC 2 cut(s) 98, 124
XapI RAATTY 3 cut(s) 347, 424, 900
XceI RCATGY 2 cut(s) 884, 941
XmnI GAANNNNTTC 1 cut(s) 347
XspI CTAG 2 cut(s) 257, 864
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.