Rorug01G0375900

agenet domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000527
Physical Location & Seq
Forward (+)
48980507 .. 48981172
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0375900.1

Sequence Viewer

Length: 666 bp
ATGAAGGTTCTCTATTGGAATTTACGGGGCATCAGTAACGACCCCACTAAAGATGCATTGAAAAAGTTTGTATTAGACAATAATCCGGAAGTTTTATGCATTTCCGAACCCTTTGTTGGACTGGATTCTATTCCATCTTCTTTTTGGTGGTCTATGTCGATGGTACCTATGTGTACTAACGAACGAGAAGGGGCAATTCCAAACTTATGGGTATTTTGTAAGTCTTCAATTGTTCAAAACGTTCAGATTCTTTTGGTGTCTGACCAGCAGGTTACCCTTCGGATTTTGTTTGATTCTATTCCATGTATCTTCACTACTGTTTATGCTAAAACTACTGTGATTGAGCGTAGAAGATTATGGGAGGAGCTCTATGAAATTAAAGCAAGGTTTGGTGATGGCCCTTGGTTGGTTTGTGGTGACTTTAATGCAGTTTTAGGAGCTCACGAAAAGATGGGAGGTGCAGTTGTCTGTCGTCGGTCTTGTGAAGAATTTCAGGCCATGTCTGATCAGTGTGAGCTGGAGCATATAACTACTCATGGTGCCCAATTCACTTGGGTGCGTAGGAGGGGTCTCAGAGGAAATGTGGAGCTGCGTTTGGCGAATCATGCTTTGGTTGGATGCTTGGGATCAGTTTGTTTGTTGTACCTTGCCTCGTATATGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

221

Amino Acids

25.15

Weight (kDa)

6.43

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 145 2.2e-09 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 259
Acc65I GGTACC 1 cut(s) 163
AccB1I GGYRCC 2 cut(s) 163, 539
AccIII TCCGGA 1 cut(s) 85
AclI AACGTT 1 cut(s) 240
AclWI GGATC 1 cut(s) 634
AcsI RAATTY 2 cut(s) 19, 488
AfaI GTAC 3 cut(s) 165, 175, 644
AfiI CCNNNNNNNGG 2 cut(s) 116, 406
AgsI TTSAA 3 cut(s) 61, 228, 236
AjuI GAANNNNNNNTTGG 4 cut(s) 99, 131, 593, 625
AleI CACNNNNGTG 1 cut(s) 554
AluBI AGCT 4 cut(s) 367, 440, 517, 589
AluI AGCT 4 cut(s) 367, 440, 517, 589
Alw21I GWGCWC 2 cut(s) 369, 442
Alw26I GTCTC 1 cut(s) 575
AlwI GGATC 1 cut(s) 634
Aor13HI TCCGGA 1 cut(s) 85
AoxI GGCC 2 cut(s) 397, 495
ApeKI GCWGC 1 cut(s) 589
ApoI RAATTY 2 cut(s) 19, 488
Asp700I GAANNNNTTC 1 cut(s) 489
Asp718I GGTACC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 2 cut(s) 404, 428
BaeGI GKGCMC 1 cut(s) 544
BaeI ACNNNNGTAYC 2 cut(s) 155, 188
BanI GGYRCC 2 cut(s) 163, 539
BanII GRGCYC 2 cut(s) 369, 442
BbsI GAAGAC 1 cut(s) 216
Bbv12I GWGCWC 2 cut(s) 369, 442
BbvI GCAGC 1 cut(s) 576
BccI CCATC 4 cut(s) 142, 154, 389, 445
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 1 cut(s) 575
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 1 cut(s) 590
BlsI GCNGC 1 cut(s) 591
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 165, 541
BmsI GCATC 3 cut(s) 39, 43, 608
BpiI GAAGAC 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 539
BsaI GGTCTC 1 cut(s) 575
BsaJI CCNNGG 1 cut(s) 401
BsaWI WCCGGW 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 406
Bse1I ACTGG 1 cut(s) 126
BseAI TCCGGA 1 cut(s) 85
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 1 cut(s) 623
BseLI CCNNNNNNNGG 2 cut(s) 116, 406
BseMII CTCAG 1 cut(s) 586
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 1 cut(s) 377
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 1 cut(s) 576
BsgI GTGCAG 1 cut(s) 480
BshFI GGCC 2 cut(s) 399, 497
BshNI GGYRCC 2 cut(s) 163, 539
BsiHKAI GWGCWC 2 cut(s) 369, 442
BsiSI CCGG 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 116, 406
BsmAI GTCTC 1 cut(s) 575
BsnI GGCC 2 cut(s) 399, 497
Bso31I GGTCTC 1 cut(s) 575
Bsp1286I GDGCHC 3 cut(s) 369, 442, 544
Bsp13I TCCGGA 1 cut(s) 85
Bsp143I GATC 2 cut(s) 505, 626
BspANI GGCC 2 cut(s) 399, 497
BspCNI CTCAG 1 cut(s) 585
BspEI TCCGGA 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 165, 541
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 1 cut(s) 634
BspT107I GGYRCC 2 cut(s) 163, 539
BspTNI GGTCTC 1 cut(s) 575
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 2 cut(s) 505, 626
BssT1I CCWWGG 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 319, 337
BstDEI CTNAG 1 cut(s) 572
BstEII GGTNACC 1 cut(s) 271
BstF5I GGATG 1 cut(s) 623
BstKTI GATC 2 cut(s) 508, 629
BstMAI GTCTC 1 cut(s) 575
BstMBI GATC 2 cut(s) 505, 626
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstPI GGTNACC 1 cut(s) 271
BstSLI GKGCMC 1 cut(s) 544
BstV1I GCAGC 1 cut(s) 576
BstV2I GAAGAC 1 cut(s) 216
BstXI CCANNNNNNTGG 1 cut(s) 207
BsuRI GGCC 2 cut(s) 399, 497
BtsCI GGATG 1 cut(s) 623
BtsIMutI CAGTG 1 cut(s) 515
BveI ACCTGC 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 398
Csp6I GTAC 3 cut(s) 164, 174, 643
CviAII CATG 4 cut(s) 303, 499, 536, 605
CviJI RGCY 6 cut(s) 367, 399, 440, 497, 517, 589
CviKI_1 RGCY 6 cut(s) 367, 399, 440, 497, 517, 589
CviQI GTAC 3 cut(s) 164, 174, 643
DdeI CTNAG 1 cut(s) 572
DpnI GATC 2 cut(s) 507, 628
DpnII GATC 2 cut(s) 505, 626
Ecl136II GAGCTC 2 cut(s) 367, 440
Eco130I CCWWGG 1 cut(s) 401
Eco24I GRGCYC 2 cut(s) 369, 442
Eco31I GGTCTC 1 cut(s) 575
Eco53kI GAGCTC 2 cut(s) 367, 440
Eco91I GGTNACC 1 cut(s) 271
EcoICRI GAGCTC 2 cut(s) 367, 440
EcoO65I GGTNACC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 401
EcoT22I ATGCAT 2 cut(s) 58, 101
EcoT38I GRGCYC 2 cut(s) 369, 442
ErhI CCWWGG 1 cut(s) 401
FaeI CATG 4 cut(s) 306, 502, 539, 608
FatI CATG 4 cut(s) 302, 498, 535, 604
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 1 cut(s) 590
FokI GGATG 1 cut(s) 630
FriOI GRGCYC 2 cut(s) 369, 442
Fsp4HI GCNGC 1 cut(s) 590
GluI GCNGC 1 cut(s) 590
GsuI CTGGAG 1 cut(s) 539
HaeIII GGCC 2 cut(s) 399, 497
HapII CCGG 1 cut(s) 86
Hin1II CATG 4 cut(s) 306, 502, 539, 608
HinfI GANTC 4 cut(s) 125, 247, 293, 601
HpaII CCGG 1 cut(s) 86
HphI GGTGA 2 cut(s) 404, 428
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 7 cut(s) 106, 246, 262, 282, 505, 575, 665
Hpy188III TCNNGA 2 cut(s) 86, 443
Hpy8I GTNNAC 1 cut(s) 174
Hpy99I CGWCG 1 cut(s) 477
HpyAV CCTTC 2 cut(s) 182, 287
HpyCH4III ACNGT 2 cut(s) 319, 337
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 4 cut(s) 56, 99, 428, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 1 cut(s) 572
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 4 cut(s) 306, 502, 539, 608
Kpn2I TCCGGA 1 cut(s) 85
KpnI GGTACC 1 cut(s) 167
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 2 cut(s) 505, 626
LmnI GCTCC 4 cut(s) 364, 437, 520, 586
LpnPI CCDG 6 cut(s) 99, 107, 254, 278, 479, 503
Lsp1109I GCAGC 1 cut(s) 576
LweI GCATC 3 cut(s) 39, 43, 608
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 3 cut(s) 35, 271, 416
MalI GATC 2 cut(s) 507, 628
MboI GATC 2 cut(s) 505, 626
MboII GAAGA 5 cut(s) 129, 216, 301, 363, 497
MfeI CAATTG 1 cut(s) 228
MhlI GDGCHC 3 cut(s) 369, 442, 544
MluCI AATT 6 cut(s) 19, 195, 228, 375, 488, 545
MmeI TCCRAC 2 cut(s) 97, 595
MnlI CCTC 5 cut(s) 355, 449, 558, 569, 661
Mph1103I ATGCAT 2 cut(s) 58, 101
MroI TCCGGA 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 489
MseI TTAA 2 cut(s) 378, 423
MslI CAYNNNNRTG 1 cut(s) 554
MspI CCGG 1 cut(s) 86
MunI CAATTG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 605
NdeII GATC 2 cut(s) 505, 626
NlaIII CATG 4 cut(s) 306, 502, 539, 608
NlaIV GGNNCC 2 cut(s) 165, 541
NmuCI GTSAC 1 cut(s) 416
NsiI ATGCAT 2 cut(s) 58, 101
OliI CACNNNNGTG 1 cut(s) 554
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 4 cut(s) 125, 247, 293, 601
PkrI GCNGC 1 cut(s) 591
Psp124BI GAGCTC 2 cut(s) 369, 442
Psp1406I AACGTT 1 cut(s) 240
PspEI GGTNACC 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 165, 541
PspPI GGNCC 1 cut(s) 398
RsaI GTAC 3 cut(s) 165, 175, 644
RsaNI GTAC 3 cut(s) 164, 174, 643
RseI CAYNNNNRTG 1 cut(s) 554
SacI GAGCTC 2 cut(s) 369, 442
SaqAI TTAA 2 cut(s) 378, 423
SatI GCNGC 1 cut(s) 590
Sau3AI GATC 2 cut(s) 505, 626
Sau96I GGNCC 1 cut(s) 398
SduI GDGCHC 3 cut(s) 369, 442, 544
SfaNI GCATC 3 cut(s) 39, 43, 608
SmiMI CAYNNNNRTG 1 cut(s) 554
Sse9I AATT 6 cut(s) 19, 195, 228, 375, 488, 545
SstI GAGCTC 2 cut(s) 369, 442
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 2 cut(s) 319, 337
TaiI ACGT 1 cut(s) 243
TaqI TCGA 1 cut(s) 158
TaqII GACCGA 1 cut(s) 465
TasI AATT 6 cut(s) 19, 195, 228, 375, 488, 545
TatI WGTACW 1 cut(s) 173
TfiI GAWTC 4 cut(s) 125, 247, 293, 601
Tru1I TTAA 2 cut(s) 378, 423
Tru9I TTAA 2 cut(s) 378, 423
TscAI CASTG 1 cut(s) 515
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 1 cut(s) 589
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 2 cut(s) 17, 387
TspRI CASTG 1 cut(s) 515
XapI RAATTY 2 cut(s) 19, 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 489
Zsp2I ATGCAT 2 cut(s) 58, 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.