Rmu_sc0034594.1_g000001

agenet domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034594.1
OG0000527
Physical Location & Seq
Reverse (-)
874 .. 2342
1469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034594.1_g000001.1.cds

Sequence Viewer

Length: 1062 bp
atggagtgtgcaggtaaccctgctgcaactaccaaccaacaaattccagttgctgaggctggactacccggaaagacacctactcatgatcaacctctaccattgtgcatgtacaagatgcattctgaaaagactatggagggctcaagttctgaagatccaacagaagatggaacagctcaagctactgcaatggaagtagaggtggctgggactgaaatatcctcagaggcacctcttcctgatcaacctttattattgtgtgacatggactctgaaaacactttggagggtaaccccgctgggactgcaagaacatcccttcatgatcaatttcaggcatcaagcatagctgaaatgtattctgaacatactactgagggctcatgcaagcgtgctgggacaacaaagcttactgggagacaaggtgaagctggaattaccagtgacattgagcaagaagacactccacacctgcctttcgtgaaaaaatctccattttggaaaatgttggaatccatggatgcattcagaaggtttccgcaacagccacattttaagcccttactgaaggttaaaatgttatgccgtgaaggactagcccttggaggtatgcatatctttgccgctgtggtcgagtacacttcgaagctgcaggttgatgatcctagtgactccatcaacgacattttggaagctctagttgaactggaacggctgggatttgatgtcaaggcactccaggtccgactgaatgaattgcaagacatgaaacttaggtttgcagagcttaagaacaagtcagacggagtcaaaatcctgatcacaaattgtacgcatgaaagaagcaaaggctctgaagttatcagtgggatggatgcggagatcaatgacttggaggaaaagatcagagggatacagtcaaaaagggcaaaggcggtgtcagagagggcggcgaaggattctgaaatcagtttgttggaatcagaagcaaatgctatcaatgaaggcattcagagcatcgagcatgatttccaaaatctagcagcagctgcatggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

353

Amino Acids

38.63

Weight (kDa)

4.8

Isoelectric Point (pI)

56.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 483
Acc36I ACCTGC 3 cut(s) 2, 483, 646
AccB1I GGYRCC 1 cut(s) 232
AciI CCGC 6 cut(s) 300, 542, 627, 881, 938, 953
AclWI GGATC 2 cut(s) 152, 659
AcsI RAATTY 1 cut(s) 42
AcuI CTGAAG 3 cut(s) 174, 590, 879
AfaI GTAC 3 cut(s) 113, 641, 835
AflII CTTAAG 1 cut(s) 791
AgsI TTSAA 1 cut(s) 707
AjnI CCWGG 1 cut(s) 741
AluBI AGCT 9 cut(s) 179, 185, 353, 412, 434, 652, 698, 790, 1052
AluI AGCT 9 cut(s) 179, 185, 353, 412, 434, 652, 698, 790, 1052
Alw26I GTCTC 1 cut(s) 415
AlwI GGATC 2 cut(s) 152, 659
AlwNI CAGNNNCTG 2 cut(s) 53, 1052
ApeKI GCWGC 5 cut(s) 23, 652, 1046, 1049, 1052
ApoI RAATTY 1 cut(s) 42
ArsI GACNNNNNNTTYG 2 cut(s) 926, 958
Asp700I GAANNNNTTC 1 cut(s) 1011
AspS9I GGNCC 1 cut(s) 745
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 440
AsuII TTCGAA 1 cut(s) 647
AvaII GGWCC 1 cut(s) 745
BanI GGYRCC 1 cut(s) 232
BanII GRGCYC 2 cut(s) 146, 386
BbsI GAAGAC 1 cut(s) 468
BbvCI CCTCAGC 1 cut(s) 54
BbvI GCAGC 4 cut(s) 10, 639, 1039, 1058
BccI CCATC 3 cut(s) 164, 686, 868
BceAI ACGGC 2 cut(s) 573, 731
BciT130I CCWGG 1 cut(s) 743
BciVI GTATCC 1 cut(s) 909
BclI TGATCA 4 cut(s) 88, 244, 328, 822
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 415
BfaI CTAG 4 cut(s) 599, 669, 701, 1043
BfmI CTRYAG 1 cut(s) 653
BfrI CTTAAG 1 cut(s) 791
BfuAI ACCTGC 3 cut(s) 2, 483, 646
BfuI GTATCC 1 cut(s) 909
BisI GCNGC 7 cut(s) 24, 627, 653, 954, 1047, 1050, 1053
BlsI GCNGC 7 cut(s) 25, 628, 654, 955, 1048, 1051, 1054
Bme1390I CCNGG 2 cut(s) 69, 743
Bme18I GGWCC 1 cut(s) 745
BmgT120I GGNCC 1 cut(s) 745
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 2 cut(s) 69, 743
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 5 cut(s) 108, 350, 514, 868, 1029
BmuI ACTGGG 1 cut(s) 426
BpiI GAAGAC 1 cut(s) 468
BpmI CTGGAG 1 cut(s) 725
Bpu10I CCTNAGC 1 cut(s) 54
Bpu14I TTCGAA 1 cut(s) 647
BpuEI CTTGAG 2 cut(s) 130, 165
BpuMI CCSGG 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 519, 604
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bse1I ACTGG 4 cut(s) 47, 421, 444, 714
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 743
BseDI CCNNGG 2 cut(s) 519, 604
BseGI GGATG 4 cut(s) 317, 529, 879, 883
BseMI GCAATG 1 cut(s) 198
BseMII CTCAG 3 cut(s) 45, 240, 369
BseNI ACTGG 4 cut(s) 47, 421, 444, 714
BseXI GCAGC 4 cut(s) 10, 639, 1039, 1058
BseYI CCCAGC 4 cut(s) 209, 302, 398, 718
BsgI GTGCAG 1 cut(s) 30
BshNI GGYRCC 1 cut(s) 232
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 3 cut(s) 226, 319, 415
BsmAI GTCTC 1 cut(s) 415
BsmFI GGGAC 3 cut(s) 226, 319, 415
BsmI GAATGC 3 cut(s) 121, 527, 1011
Bsp119I TTCGAA 1 cut(s) 647
Bsp1286I GDGCHC 2 cut(s) 146, 386
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 8 cut(s) 88, 157, 244, 328, 664, 822, 885, 906
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 6 cut(s) 300, 542, 627, 881, 938, 953
BspCNI CTCAG 3 cut(s) 46, 239, 370
BspHI TCATGA 2 cut(s) 85, 325
BspLI GGNNCC 1 cut(s) 234
BspMAI CTGCAG 1 cut(s) 657
BspMI ACCTGC 3 cut(s) 2, 483, 646
BspPI GGATC 2 cut(s) 152, 659
BspT104I TTCGAA 1 cut(s) 647
BspT107I GGYRCC 1 cut(s) 232
BspTI CTTAAG 1 cut(s) 791
BsrDI GCAATG 1 cut(s) 198
BsrGI TGTACA 1 cut(s) 111
BsrI ACTGG 4 cut(s) 47, 421, 444, 714
BssECI CCNNGG 2 cut(s) 519, 604
BssMI GATC 8 cut(s) 88, 157, 244, 328, 664, 822, 885, 906
BssT1I CCWWGG 2 cut(s) 519, 604
Bst2UI CCWGG 1 cut(s) 743
Bst4CI ACNGT 1 cut(s) 921
Bst6I CTCTTC 1 cut(s) 243
BstAFI CTTAAG 1 cut(s) 791
BstAPI GCANNNNNTGC 1 cut(s) 1052
BstAUI TGTACA 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 647
BstC8I GCNNGC 2 cut(s) 392, 396
BstDEI CTNAG 4 cut(s) 54, 226, 378, 776
BstDSI CCRYGG 1 cut(s) 519
BstEII GGTNACC 2 cut(s) 14, 293
BstF5I GGATG 4 cut(s) 317, 529, 879, 883
BstKTI GATC 8 cut(s) 91, 160, 247, 331, 667, 825, 888, 909
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 8 cut(s) 88, 157, 244, 328, 664, 822, 885, 906
BstMWI GCNNNNNNNGC 3 cut(s) 308, 1017, 1052
BstNI CCWGG 1 cut(s) 743
BstNSI RCATGY 1 cut(s) 112
BstPI GGTNACC 2 cut(s) 14, 293
BstSCI CCNGG 2 cut(s) 67, 741
BstSFI CTRYAG 1 cut(s) 653
BstV1I GCAGC 4 cut(s) 10, 639, 1039, 1058
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuI GTATCC 1 cut(s) 909
BtgI CCRYGG 1 cut(s) 519
BtsCI GGATG 4 cut(s) 317, 529, 879, 883
BtsIMutI CAGTG 2 cut(s) 451, 874
BveI ACCTGC 3 cut(s) 2, 483, 646
Cac8I GCNNGC 2 cut(s) 392, 396
CaiI CAGNNNCTG 2 cut(s) 53, 1052
CciI TCATGA 2 cut(s) 85, 325
Cfr13I GGNCC 1 cut(s) 745
Csp6I GTAC 3 cut(s) 112, 640, 834
CviQI GTAC 3 cut(s) 112, 640, 834
DdeI CTNAG 4 cut(s) 54, 226, 378, 776
DpnI GATC 8 cut(s) 90, 159, 246, 330, 666, 824, 887, 908
DpnII GATC 8 cut(s) 88, 157, 244, 328, 664, 822, 885, 906
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 2 cut(s) 519, 604
Eco24I GRGCYC 2 cut(s) 146, 386
Eco47I GGWCC 1 cut(s) 745
Eco57I CTGAAG 3 cut(s) 174, 590, 879
Eco91I GGTNACC 2 cut(s) 14, 293
EcoO65I GGTNACC 2 cut(s) 14, 293
EcoRII CCWGG 1 cut(s) 741
EcoT14I CCWWGG 2 cut(s) 519, 604
EcoT22I ATGCAT 3 cut(s) 123, 529, 618
EcoT38I GRGCYC 2 cut(s) 146, 386
ErhI CCWWGG 2 cut(s) 519, 604
FaqI GGGAC 3 cut(s) 226, 319, 415
FauI CCCGC 1 cut(s) 307
FbaI TGATCA 4 cut(s) 88, 244, 328, 822
Fnu4HI GCNGC 7 cut(s) 24, 627, 653, 954, 1047, 1050, 1053
FokI GGATG 4 cut(s) 304, 536, 886, 890
FriOI GRGCYC 2 cut(s) 146, 386
Fsp4HI GCNGC 7 cut(s) 24, 627, 653, 954, 1047, 1050, 1053
FspBI CTAG 4 cut(s) 599, 669, 701, 1043
GluI GCNGC 7 cut(s) 24, 627, 653, 954, 1047, 1050, 1053
GsaI CCCAGC 4 cut(s) 213, 306, 402, 722
GsuI CTGGAG 1 cut(s) 725
HapII CCGG 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 6 cut(s) 272, 515, 674, 810, 962, 983
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 1 cut(s) 642
Hpy188III TCNNGA 5 cut(s) 86, 242, 326, 484, 820
Hpy8I GTNNAC 1 cut(s) 642
HpyAV CCTTC 6 cut(s) 332, 528, 565, 587, 952, 1001
HpyCH4III ACNGT 1 cut(s) 921
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 1017, 1052
HpyF3I CTNAG 4 cut(s) 54, 226, 378, 776
Ksp22I TGATCA 4 cut(s) 88, 244, 328, 822
Kzo9I GATC 8 cut(s) 88, 157, 244, 328, 664, 822, 885, 906
Lsp1109I GCAGC 4 cut(s) 10, 639, 1039, 1058
LweI GCATC 5 cut(s) 108, 350, 514, 868, 1029
MaeI CTAG 4 cut(s) 599, 669, 701, 1043
MaeIII GTNAC 5 cut(s) 14, 263, 293, 446, 671
MalI GATC 8 cut(s) 90, 159, 246, 330, 666, 824, 887, 908
MboI GATC 8 cut(s) 88, 157, 244, 328, 664, 822, 885, 906
MboII GAAGA 4 cut(s) 167, 179, 230, 473
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 2 cut(s) 146, 386
MluCI AATT 5 cut(s) 42, 332, 438, 758, 829
MlyI GAGTC 3 cut(s) 266, 668, 819
MmeI TCCRAC 4 cut(s) 185, 492, 772, 960
Mph1103I ATGCAT 3 cut(s) 123, 529, 618
MroXI GAANNNNTTC 1 cut(s) 1011
MseI TTAA 3 cut(s) 558, 576, 792
MspA1I CMGCKG 3 cut(s) 302, 629, 1052
MspCI CTTAAG 1 cut(s) 791
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 2 cut(s) 69, 743
Mva1269I GAATGC 3 cut(s) 121, 527, 1011
MvaI CCWGG 1 cut(s) 743
MwoI GCNNNNNNNGC 3 cut(s) 308, 1017, 1052
NciI CCSGG 1 cut(s) 69
NcoI CCATGG 1 cut(s) 519
NdeII GATC 8 cut(s) 88, 157, 244, 328, 664, 822, 885, 906
NlaIV GGNNCC 1 cut(s) 234
NmuCI GTSAC 3 cut(s) 263, 446, 671
NsiI ATGCAT 3 cut(s) 123, 529, 618
NspI RCATGY 1 cut(s) 112
NspV TTCGAA 1 cut(s) 647
PagI TCATGA 2 cut(s) 85, 325
PaqCI CACCTGC 1 cut(s) 483
PctI GAATGC 3 cut(s) 121, 527, 1011
PdmI GAANNNNTTC 1 cut(s) 1011
PfeI GAWTC 3 cut(s) 515, 962, 983
PflFI GACNNNGTC 1 cut(s) 809
PkrI GCNGC 7 cut(s) 25, 628, 654, 955, 1048, 1051, 1054
PleI GAGTC 3 cut(s) 266, 668, 818
PpsI GAGTC 3 cut(s) 266, 668, 818
Psp6I CCWGG 1 cut(s) 741
PspEI GGTNACC 2 cut(s) 14, 293
PspFI CCCAGC 4 cut(s) 209, 302, 398, 718
PspGI CCWGG 1 cut(s) 741
PspN4I GGNNCC 1 cut(s) 234
PspPI GGNCC 1 cut(s) 745
PstI CTGCAG 1 cut(s) 657
PstNI CAGNNNCTG 2 cut(s) 53, 1052
PsuI RGATCY 1 cut(s) 157
PsyI GACNNNGTC 1 cut(s) 809
PvuII CAGCTG 1 cut(s) 1052
RsaI GTAC 3 cut(s) 113, 641, 835
RsaNI GTAC 3 cut(s) 112, 640, 834
SaqAI TTAA 3 cut(s) 558, 576, 792
SatI GCNGC 7 cut(s) 24, 627, 653, 954, 1047, 1050, 1053
Sau3AI GATC 8 cut(s) 88, 157, 244, 328, 664, 822, 885, 906
Sau96I GGNCC 1 cut(s) 745
SchI GAGTC 3 cut(s) 266, 668, 819
ScrFI CCNGG 2 cut(s) 69, 743
SduI GDGCHC 2 cut(s) 146, 386
SfaNI GCATC 5 cut(s) 108, 350, 514, 868, 1029
SfcI CTRYAG 1 cut(s) 653
SfuI TTCGAA 1 cut(s) 647
SinI GGWCC 1 cut(s) 745
SmlI CTYRAG 3 cut(s) 145, 180, 791
SmoI CTYRAG 3 cut(s) 145, 180, 791
Sse9I AATT 5 cut(s) 42, 332, 438, 758, 829
SsiI CCGC 6 cut(s) 300, 542, 627, 881, 938, 953
SspMI CTAG 4 cut(s) 599, 669, 701, 1043
StyD4I CCNGG 2 cut(s) 67, 741
StyI CCWWGG 2 cut(s) 519, 604
TaaI ACNGT 1 cut(s) 921
TaqI TCGA 3 cut(s) 636, 647, 1023
TasI AATT 5 cut(s) 42, 332, 438, 758, 829
TatI WGTACW 2 cut(s) 111, 639
TauI GCSGC 2 cut(s) 629, 956
TfiI GAWTC 3 cut(s) 515, 962, 983
Tru1I TTAA 3 cut(s) 558, 576, 792
Tru9I TTAA 3 cut(s) 558, 576, 792
TscAI CASTG 2 cut(s) 451, 874
TseFI GTSAC 3 cut(s) 263, 446, 671
TseI GCWGC 5 cut(s) 23, 652, 1046, 1049, 1052
Tsp45I GTSAC 3 cut(s) 263, 446, 671
TspDTI ATGAA 5 cut(s) 314, 771, 785, 855, 1020
TspGWI ACGGA 1 cut(s) 822
TspRI CASTG 2 cut(s) 451, 874
Tth111I GACNNNGTC 1 cut(s) 809
Vha464I CTTAAG 1 cut(s) 791
VpaK11BI GGWCC 1 cut(s) 745
XapI RAATTY 1 cut(s) 42
XceI RCATGY 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 1011
XspI CTAG 4 cut(s) 599, 669, 701, 1043
Zsp2I ATGCAT 3 cut(s) 123, 529, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.