Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000527

Physical Location & Seq

Genomic Coordinates Reverse (-)

8017111 .. 8019520

Gene Structure 2410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGAACAAAAGTAAATTCTTGTGGCGGTTAGCTAAAGCGCCTATGTTTAGTCCTGGAACAACGGTGGAAGTGAGTTCTAAGATAAATAACAAAGAAGTCGTTTGGGTTCCTGCAGTGGTTATTAAAGAGTTTAAGGAAGATGATGAGTATAAGTATATTGTCAGGGTTTATGATAAGTCCTTCAGCTGCAAGGGTAATAAGGCTGCAAGACTCAACAAAACCGTTGATTTGTGTAGTCTTAGGCCTACACCGCCTTCTATTTCGGTTGAAGAGTATCAATTAAAGGAATACGTAGAGGTGTTTCATGATGGTATGGGATGGCGTCAAGGACGAGTGATGAAAATTCAAGAACGAGTGATGTTAAGTCAAGGACGAGTGATGGTAAGTCAAGGACGAGTGATGGGAAATCTCTCTCAGAAATGTTATATAGTGCTGTTAGAGGCTACAAAGAAGCAAATATCATTCAAACAGTCAGATCTTAGGCCTTTGCAGGTGTGGGAAGATGGTGTTTGGAAGACAAGGGAATCGTCGTTAACTCAGGGATCAGGAGATGAGACCAGTGATTCTGTGAGGAATGCAAATGAATCTGATCCACCGGTAACTCCACGTCCGGGCATAACTACACCACCGTTGAAACAAATAGAGGCTGAAACTCAAAGAAAGACACTTCCGAGGAATCAGAATGCTTCAGTGAACGATTCAACACGAGAGAATGAAAATAGTGAAGATATTAATCGAAAAAGGAAAAGAGAAGAAAGCCTTTGTTCTGATGCTAGTGTTGAGGACACAACAATGACTTTGCCATTTGAAAAGAAGTTGTCAATTTGGAAGACACTTGAATCAGTGGAGACAGTCCCACAAAGTCCTCATTTCAGCCCGTTGGTTGAGACTAGAGAAGATTGCCGTGAAATGTCTGCGGTTGGGATGATGCTCACCTTTCCTTGTTTACTTGAGGAAGTCAAATCTCTGCAACACGACAATTCCATAAGCTCATTGATAAGCCTCAGTAATAACTTTTGCGAGCTAGAGAAACACGGGTTCAATGTAAAGGCACCTCAGTCACGGATCAGTAAGCTGTTGTCTCTTAGAGGTAAGCAATCAATGAAAATGGATGAACTCAAAGGTGCTGAGAAAGTGACTGCAGAAAAAGAGAGCATAAAGATTGAGAACGAACGCAAGATTCTAGAGCTGCAGAGGCTGAATGAGGAGGTAGATAAAGAGATAGCTCAGAGTAAGTCATGTGCAGCGAAGATTGTCCAACAACTTGAAGATGTGGAACTTCAGTTTCAAACAACTGCATCGGCTCCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046983

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet DUF724

Protein Analysis

437

Amino Acids

49.74

Weight (kDa)

7.51

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	5 - 71	9.3e-13	Agenet domain
DUF724	PF05266	253 - 422	2.3e-58	Protein of unknown function (DUF724)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca	FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica	MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica	Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis	pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis	RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata	RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora	Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii	Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa	Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha	Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana	Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	481
Acc36I	ACCTGC	1 cut(s)	481
AccB1I	GGYRCC	1 cut(s)	1051
AciI	CCGC	3 cut(s)	25, 251, 917
AclWI	GGATC	3 cut(s)	550, 584, 1073
AcsI	RAATTY	2 cut(s)	14, 342
AcuI	CTGAAG	3 cut(s)	166, 672, 1265
AcyI	GRCGYC	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	611
AgeI	ACCGGT	1 cut(s)	595
AjiI	CACGTC	1 cut(s)	608
AjnI	CCWGG	1 cut(s)	52
AluBI	AGCT	7 cut(s)	32, 186, 990, 1024, 1075, 1189, 1226
AluI	AGCT	7 cut(s)	32, 186, 990, 1024, 1075, 1189, 1226
Alw26I	GTCTC	4 cut(s)	548, 842, 881, 1086
AlwI	GGATC	3 cut(s)	550, 584, 1073
AlwNI	CAGNNNCTG	1 cut(s)	1198
AoxI	GGCC	2 cut(s)	242, 482
ApeKI	GCWGC	4 cut(s)	186, 203, 1189, 1244
ApoI	RAATTY	2 cut(s)	14, 342
AseI	ATTAAT	1 cut(s)	732
AsiGI	ACCGGT	1 cut(s)	595
AspLEI	GCGC	1 cut(s)	40
AsuC2I	CCSGG	1 cut(s)	612
AsuHPI	GGTGA	1 cut(s)	925
BanI	GGYRCC	1 cut(s)	1051
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	2 cut(s)	521, 836
BbvI	GCAGC	4 cut(s)	173, 190, 1176, 1256
BccI	CCATC	5 cut(s)	302, 312, 373, 394, 497
BceAI	ACGGC	1 cut(s)	888
BciT130I	CCWGG	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	612
BcoDI	GTCTC	4 cut(s)	548, 842, 881, 1086
BfaI	CTAG	4 cut(s)	774, 891, 1025, 1184
BfmI	CTRYAG	3 cut(s)	111, 1140, 1190
BfoI	RGCGCY	1 cut(s)	41
BfuAI	ACCTGC	1 cut(s)	481
BglII	AGATCT	1 cut(s)	475
BisI	GCNGC	4 cut(s)	187, 204, 1190, 1245
BlsI	GCNGC	4 cut(s)	188, 205, 1191, 1246
Bme1390I	CCNGG	2 cut(s)	54, 612
BmgBI	CACGTC	1 cut(s)	608
BmiI	GGNNCC	3 cut(s)	108, 1053, 1305
BmrFI	CCNGG	2 cut(s)	54, 612
BmsI	GCATC	3 cut(s)	760, 918, 1307
BpiI	GAAGAC	2 cut(s)	521, 836
BpuEI	CTTGAG	1 cut(s)	971
BpuMI	CCSGG	1 cut(s)	612
BsaAI	YACGTR	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	732
BsaHI	GRCGYC	1 cut(s)	322
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	671, 1307
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse118I	RCCGGY	1 cut(s)	595
Bse1I	ACTGG	1 cut(s)	558
Bse8I	GATNNNNATC	1 cut(s)	732
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	2 cut(s)	671, 1307
BseGI	GGATG	3 cut(s)	323, 930, 1117
BseJI	GATNNNNATC	1 cut(s)	732
BseLI	CCNNNNNNNGG	1 cut(s)	611
BseMII	CTCAG	6 cut(s)	428, 551, 1018, 1070, 1119, 1241
BseNI	ACTGG	1 cut(s)	558
BseRI	GAGGAG	1 cut(s)	1220
BseXI	GCAGC	4 cut(s)	173, 190, 1176, 1256
BsgI	GTGCAG	1 cut(s)	1263
BshFI	GGCC	2 cut(s)	244, 484
BshNI	GGYRCC	1 cut(s)	1051
BshTI	ACCGGT	1 cut(s)	595
BsiSI	CCGG	2 cut(s)	596, 611
BslFI	GGGAC	1 cut(s)	839
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	4 cut(s)	548, 842, 881, 1086
BsmFI	GGGAC	1 cut(s)	839
BsmI	GAATGC	2 cut(s)	580, 688
BsnI	GGCC	2 cut(s)	244, 484
Bso31I	GGTCTC	1 cut(s)	548
Bsp143I	GATC	4 cut(s)	475, 542, 589, 1065
Bsp19I	CCATGG	1 cut(s)	1307
BspACI	CCGC	3 cut(s)	25, 251, 917
BspANI	GGCC	2 cut(s)	244, 484
BspCNI	CTCAG	6 cut(s)	427, 550, 1017, 1069, 1120, 1240
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	3 cut(s)	108, 1053, 1305
BspMAI	CTGCAG	3 cut(s)	115, 1144, 1194
BspMI	ACCTGC	1 cut(s)	481
BspPI	GGATC	3 cut(s)	550, 584, 1073
BspT107I	GGYRCC	1 cut(s)	1051
BspTNI	GGTCTC	1 cut(s)	548
BsrFI	RCCGGY	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	558
BssAI	RCCGGY	1 cut(s)	595
BssECI	CCNNGG	2 cut(s)	671, 1307
BssMI	GATC	4 cut(s)	475, 542, 589, 1065
BssNI	GRCGYC	1 cut(s)	322
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	1 cut(s)	1307
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	5 cut(s)	64, 223, 471, 630, 853
Bst6I	CTCTTC	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	322
BstBAI	YACGTR	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	1022
BstDSI	CCRYGG	1 cut(s)	1307
BstF5I	GGATG	3 cut(s)	323, 930, 1117
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	4 cut(s)	478, 545, 592, 1068
BstMAI	GTCTC	4 cut(s)	548, 842, 881, 1086
BstMBI	GATC	4 cut(s)	475, 542, 589, 1065
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 1195
BstNI	CCWGG	1 cut(s)	54
BstSCI	CCNGG	2 cut(s)	52, 610
BstSFI	CTRYAG	3 cut(s)	111, 1140, 1190
BstSNI	TACGTA	1 cut(s)	292
BstV1I	GCAGC	4 cut(s)	173, 190, 1176, 1256
BstV2I	GAAGAC	2 cut(s)	521, 836
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	244, 484
BtgI	CCRYGG	1 cut(s)	1307
BtrI	CACGTC	1 cut(s)	608
BtsCI	GGATG	3 cut(s)	323, 930, 1117
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	4 cut(s)	120, 565, 696, 849
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	1022
CaiI	CAGNNNCTG	1 cut(s)	1198
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	1 cut(s)	40
Cfr10I	RCCGGY	1 cut(s)	595
CseI	GACGC	1 cut(s)	311
CspAI	ACCGGT	1 cut(s)	595
CviAII	CATG	3 cut(s)	305, 1239, 1308
DpnI	GATC	4 cut(s)	477, 544, 591, 1067
DpnII	GATC	4 cut(s)	475, 542, 589, 1065
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco105I	TACGTA	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	1307
Eco147I	AGGCCT	2 cut(s)	244, 484
Eco31I	GGTCTC	1 cut(s)	548
Eco57I	CTGAAG	3 cut(s)	166, 672, 1265
EcoRII	CCWGG	1 cut(s)	52
EcoT14I	CCWWGG	1 cut(s)	1307
ErhI	CCWWGG	1 cut(s)	1307
FaeI	CATG	3 cut(s)	308, 1242, 1311
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FaqI	GGGAC	1 cut(s)	839
FatI	CATG	3 cut(s)	304, 1238, 1307
Fnu4HI	GCNGC	4 cut(s)	187, 204, 1190, 1245
FokI	GGATG	3 cut(s)	330, 937, 1124
Fsp4HI	GCNGC	4 cut(s)	187, 204, 1190, 1245
FspBI	CTAG	4 cut(s)	774, 891, 1025, 1184
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	4 cut(s)	187, 204, 1190, 1245
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	244, 484
HapII	CCGG	2 cut(s)	596, 611
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	322
Hin1II	CATG	3 cut(s)	308, 1242, 1311
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HinfI	GANTC	8 cut(s)	210, 524, 563, 584, 676, 698, 839, 1180
HpaI	GTTAAC	1 cut(s)	534
HpaII	CCGG	2 cut(s)	596, 611
HphI	GGTGA	1 cut(s)	925
Hpy166II	GTNNAC	3 cut(s)	534, 694, 947
Hpy188I	TCNGA	7 cut(s)	417, 475, 589, 672, 681, 769, 1230
Hpy188III	TCNNGA	4 cut(s)	305, 347, 546, 1184
Hpy8I	GTNNAC	3 cut(s)	534, 694, 947
Hpy99I	CGWCG	1 cut(s)	532
HpyAV	CCTTC	2 cut(s)	190, 264
HpyCH4III	ACNGT	5 cut(s)	64, 223, 471, 630, 853
HpyCH4IV	ACGT	2 cut(s)	291, 607
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 1195
HpySE526I	ACGT	2 cut(s)	291, 607
Hsp92I	GRCGYC	1 cut(s)	322
Hsp92II	CATG	3 cut(s)	308, 1242, 1311
HspAI	GCGC	1 cut(s)	38
KspAI	GTTAAC	1 cut(s)	534
Kzo9I	GATC	4 cut(s)	475, 542, 589, 1065
LmnI	GCTCC	1 cut(s)	1309
Lsp1109I	GCAGC	4 cut(s)	173, 190, 1176, 1256
LweI	GCATC	3 cut(s)	760, 918, 1307
MaeI	CTAG	4 cut(s)	774, 891, 1025, 1184
MaeII	ACGT	2 cut(s)	291, 607
MaeIII	GTNAC	3 cut(s)	598, 1059, 1135
MalI	GATC	4 cut(s)	477, 544, 591, 1067
MboI	GATC	4 cut(s)	475, 542, 589, 1065
MflI	RGATCY	1 cut(s)	475
MluCI	AATT	5 cut(s)	14, 278, 342, 822, 979
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	1282
MseI	TTAA	6 cut(s)	123, 132, 281, 362, 533, 732
MslI	CAYNNNNRTG	1 cut(s)	791
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	2 cut(s)	596, 611
MspR9I	CCNGG	2 cut(s)	54, 612
Mva1269I	GAATGC	2 cut(s)	580, 688
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	250, 1195
NciI	CCSGG	1 cut(s)	612
NcoI	CCATGG	1 cut(s)	1307
NdeII	GATC	4 cut(s)	475, 542, 589, 1065
NlaIII	CATG	3 cut(s)	308, 1242, 1311
NlaIV	GGNNCC	3 cut(s)	108, 1053, 1305
NmuCI	GTSAC	2 cut(s)	1059, 1135
PagI	TCATGA	1 cut(s)	304
PaqCI	CACCTGC	1 cut(s)	481
PceI	AGGCCT	2 cut(s)	244, 484
PctI	GAATGC	2 cut(s)	580, 688
PfeI	GAWTC	7 cut(s)	524, 563, 584, 676, 698, 839, 1180
PfoI	TCCNGGA	1 cut(s)	52
PinAI	ACCGGT	1 cut(s)	595
PkrI	GCNGC	4 cut(s)	188, 205, 1191, 1246
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
Ppu21I	YACGTR	1 cut(s)	292
PshBI	ATTAAT	1 cut(s)	732
Psp6I	CCWGG	1 cut(s)	52
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	3 cut(s)	108, 1053, 1305
PstI	CTGCAG	3 cut(s)	115, 1144, 1194
PstNI	CAGNNNCTG	1 cut(s)	1198
PsuI	RGATCY	1 cut(s)	475
PvuII	CAGCTG	1 cut(s)	186
RseI	CAYNNNNRTG	1 cut(s)	791
SaqAI	TTAA	6 cut(s)	123, 132, 281, 362, 533, 732
SatI	GCNGC	4 cut(s)	187, 204, 1190, 1245
Sau3AI	GATC	4 cut(s)	475, 542, 589, 1065
SchI	GAGTC	1 cut(s)	204
ScrFI	CCNGG	2 cut(s)	54, 612
SfaNI	GCATC	3 cut(s)	760, 918, 1307
SfcI	CTRYAG	3 cut(s)	111, 1140, 1190
SmiMI	CAYNNNNRTG	1 cut(s)	791
SmlI	CTYRAG	1 cut(s)	950
SmoI	CTYRAG	1 cut(s)	950
SnaBI	TACGTA	1 cut(s)	292
Sse9I	AATT	5 cut(s)	14, 278, 342, 822, 979
SseBI	AGGCCT	2 cut(s)	244, 484
SsiI	CCGC	3 cut(s)	25, 251, 917
SspMI	CTAG	4 cut(s)	774, 891, 1025, 1184
StuI	AGGCCT	2 cut(s)	244, 484
StyD4I	CCNGG	2 cut(s)	52, 610
StyI	CCWWGG	1 cut(s)	1307
TaaI	ACNGT	5 cut(s)	64, 223, 471, 630, 853
TaiI	ACGT	2 cut(s)	294, 610
TaqI	TCGA	1 cut(s)	736
TasI	AATT	5 cut(s)	14, 278, 342, 822, 979
TfiI	GAWTC	7 cut(s)	524, 563, 584, 676, 698, 839, 1180
Tru1I	TTAA	6 cut(s)	123, 132, 281, 362, 533, 732
Tru9I	TTAA	6 cut(s)	123, 132, 281, 362, 533, 732
TscAI	CASTG	4 cut(s)	120, 565, 696, 849
TseFI	GTSAC	2 cut(s)	1059, 1135
TseI	GCWGC	4 cut(s)	186, 203, 1189, 1244
Tsp45I	GTSAC	2 cut(s)	1059, 1135
TspDTI	ATGAA	7 cut(s)	17, 293, 353, 597, 729, 1118, 1128
TspGWI	ACGGA	1 cut(s)	1078
TspRI	CASTG	4 cut(s)	120, 565, 696, 849
VspI	ATTAAT	1 cut(s)	732
XapI	RAATTY	2 cut(s)	14, 342
XbaI	TCTAGA	1 cut(s)	1183
XspI	CTAG	4 cut(s)	774, 891, 1025, 1184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.