RLG00000016652

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000527
Physical Location & Seq
Forward (+)
8582255 .. 8582701
447 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016652

Sequence Viewer

Length: 360 bp
ATGAAGAAACCAAAGGAGGAGATCAGTTGTCTCTCATGTGGGATTTTCAGCCGCAGCTCGAAAGTCAAGCCGGAGTTGCTAGTAGAGTATGAAACTGTTGTCGACGAAGACGACCCTTCGAAGCCTTTGACGGAGGAAATCAAGGTGGGTTTGGTTAGGCCGTCGTCGCCTGCCGAGGAGGGGTTTGAGGTAAACGACGTCGTTGACACATTTAATTTGGACACATGGTGGCCCGAGGTGGTGATGAGTGTTGTGGGGGAGAAATACACGGTGGGGTTTAAGAGCCTGCTTGATTTGCTGGAGATTGAGCGCGGGGAGCTGCGGCGGCGAGTGGATTCAGGCTGGGAAAGAGGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

120

Amino Acids

13.56

Weight (kDa)

4.67

Isoelectric Point (pI)

57.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 201
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 312
AciI CCGC 4 cut(s) 52, 312, 322, 325
AcyI GRCGYC 1 cut(s) 198
AdeI CACNNNGTG 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 180
AluBI AGCT 2 cut(s) 57, 319
AluI AGCT 2 cut(s) 57, 319
Alw26I GTCTC 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 233
AoxI GGCC 2 cut(s) 158, 230
ApeKI GCWGC 2 cut(s) 54, 319
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 253
AsuII TTCGAA 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 66, 306
BceAI ACGGC 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 1 cut(s) 80
BisI GCNGC 5 cut(s) 52, 55, 320, 323, 326
BlsI GCNGC 5 cut(s) 53, 56, 321, 324, 327
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 320
Bpu14I TTCGAA 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 174, 234
Bsc4I CCNNNNNNNGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 174, 234
BseLI CCNNNNNNNGG 1 cut(s) 180
BseRI GAGGAG 2 cut(s) 32, 191
BseXI GCAGC 2 cut(s) 66, 306
BseYI CCCAGC 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 2 cut(s) 160, 232
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 1 cut(s) 35
BsnI GGCC 2 cut(s) 160, 232
BsoBI CYCGRG 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 119
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 4 cut(s) 52, 312, 322, 325
BspANI GGCC 2 cut(s) 160, 232
BspFNI CGCG 1 cut(s) 312
BspT104I TTCGAA 1 cut(s) 119
BssECI CCNNGG 2 cut(s) 174, 234
BssMI GATC 1 cut(s) 21
BssNI GRCGYC 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 97, 271
BstACI GRCGYC 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 119
BstC8I GCNNGC 2 cut(s) 171, 287
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 5 cut(s) 76, 166, 295, 316, 325
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 66, 306
BstV2I GAAGAC 1 cut(s) 114
BsuRI GGCC 2 cut(s) 160, 232
Cac8I GCNNGC 2 cut(s) 171, 287
CfoI GCGC 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 231
CviAII CATG 2 cut(s) 36, 225
CviJI RGCY 9 cut(s) 51, 57, 70, 124, 160, 232, 285, 319, 342
CviKI_1 RGCY 9 cut(s) 51, 57, 70, 124, 160, 232, 285, 319, 342
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
DraIII CACNNNGTG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 233
FaeI CATG 2 cut(s) 39, 228
FaiI YATR 3 cut(s) 37, 90, 226
FatI CATG 2 cut(s) 35, 224
FauI CCCGC 1 cut(s) 305
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 5 cut(s) 52, 55, 320, 323, 326
Fsp4HI GCNGC 5 cut(s) 52, 55, 320, 323, 326
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 311
GluI GCNGC 5 cut(s) 52, 55, 320, 323, 326
GsaI CCCAGC 1 cut(s) 346
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 2 cut(s) 160, 232
HapII CCGG 1 cut(s) 71
HhaI GCGC 1 cut(s) 312
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 2 cut(s) 39, 228
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HincII GTYRAC 2 cut(s) 103, 205
HindII GTYRAC 2 cut(s) 103, 205
HinfI GANTC 1 cut(s) 335
HpaII CCGG 1 cut(s) 71
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 3 cut(s) 103, 193, 205
Hpy8I GTNNAC 3 cut(s) 103, 193, 205
Hpy99I CGWCG 5 cut(s) 107, 166, 169, 200, 203
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 2 cut(s) 97, 271
HpyCH4IV ACGT 1 cut(s) 198
HpyF10VI GCNNNNNNNGC 5 cut(s) 76, 166, 295, 316, 325
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 2 cut(s) 39, 228
HspAI GCGC 1 cut(s) 310
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 6 cut(s) 84, 183, 284, 299, 324, 328
Lsp1109I GCAGC 2 cut(s) 66, 306
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 198
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 2 cut(s) 16, 119
MluCI AATT 1 cut(s) 214
MnlI CCTC 7 cut(s) 10, 127, 169, 172, 181, 229, 344
MseI TTAA 2 cut(s) 213, 279
MspI CCGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 5 cut(s) 76, 166, 295, 316, 325
NdeII GATC 1 cut(s) 21
NlaIII CATG 2 cut(s) 39, 228
NmeAIII GCCGAG 1 cut(s) 199
NspV TTCGAA 1 cut(s) 119
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PfeI GAWTC 1 cut(s) 335
PkrI GCNGC 5 cut(s) 53, 56, 321, 324, 327
PspFI CCCAGC 1 cut(s) 342
PspPI GGNCC 1 cut(s) 231
SalI GTCGAC 1 cut(s) 101
SaqAI TTAA 2 cut(s) 213, 279
SatI GCNGC 5 cut(s) 52, 55, 320, 323, 326
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 231
SetI ASST 8 cut(s) 59, 147, 192, 201, 240, 321, 355, 359
SfuI TTCGAA 1 cut(s) 119
Sse9I AATT 1 cut(s) 214
SsiI CCGC 4 cut(s) 52, 312, 322, 325
SspMI CTAG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 97, 271
TaiI ACGT 1 cut(s) 201
TaqI TCGA 3 cut(s) 59, 102, 119
TasI AATT 1 cut(s) 214
TauI GCSGC 3 cut(s) 54, 325, 328
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 2 cut(s) 213, 279
Tru9I TTAA 2 cut(s) 213, 279
TseI GCWGC 2 cut(s) 54, 319
TspDTI ATGAA 2 cut(s) 17, 105
TspGWI ACGGA 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 1 cut(s) 80
ZraI GACGTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.