Rorug01G0376000

agenet domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000527
Physical Location & Seq
Forward (+)
48981243 .. 48984001
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0376000.1

Sequence Viewer

Length: 516 bp
ATGTGGTTGGAGAATAAGGATTTCCACGGATTTGTGAGACAATGTTGGAACTCTTCTCAGACTTCTGGTTGTCCTTTAACCATCTTGCAGCACAAATTGCGAGTCTTACGCAAAGCTCTTCGTAAATGGAACTGGGAGGTTTTTGGAGATGTTCACAGAAAGGTTGAGGCTGATTTTGCTAACTTAGCAGCTCTTCAAAATGATATAGCTATTGCTGGGGGTTCAGAATCTGATTTTGCATTAGAAAGAAAGTTGCAGGCTAATTTATCAGAGTCTTTGCGAATTCAAGAGATCTTTTGGAAAGAAAAGTCAAGAGCACGTTGGTTGGCTGAGGGGGACAGAAACACTAACTTCTTTCATGCTATGTGTAAAGTTCATCGGGCTACGTCTTCAATTCACTTACTTCGTGATGGTGACCAGATTTATGATGACCCTATTTCCATTCAAGATCATATTGTTGAAACCGGGCTTGATATGAGGGTATTGAAGTTAGTGTGTCACAAGCTTGCCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

171

Amino Acids

19.77

Weight (kDa)

8.39

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 282
AgsI TTSAA 6 cut(s) 197, 287, 393, 446, 461, 487
AluBI AGCT 4 cut(s) 116, 191, 209, 505
AluI AGCT 4 cut(s) 116, 191, 209, 505
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 1 cut(s) 31
AlwNI CAGNNNCTG 1 cut(s) 230
ApeKI GCWGC 2 cut(s) 88, 188
ApoI RAATTY 1 cut(s) 282
ArsI GACNNNNNNTTYG 2 cut(s) 87, 119
AsuC2I CCSGG 1 cut(s) 466
AsuHPI GGTGA 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 319
BbvCI CCTCAGC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 100, 200
BccI CCATC 2 cut(s) 89, 404
BcnI CCSGG 1 cut(s) 466
BcoDI GTCTC 1 cut(s) 31
BglII AGATCT 1 cut(s) 291
BisI GCNGC 2 cut(s) 89, 189
BlsI GCNGC 2 cut(s) 90, 190
Bme1390I CCNGG 1 cut(s) 466
BmrFI CCNGG 1 cut(s) 466
BmrI ACTGGG 1 cut(s) 142
BmuI ACTGGG 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 381
Bpu10I CCTNAGC 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 466
BsaJI CCNNGG 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 509
Bse1I ACTGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 25
BseMII CTCAG 2 cut(s) 71, 321
BseNI ACTGG 1 cut(s) 137
BseXI GCAGC 2 cut(s) 100, 200
BseYI CCCAGC 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 319
BsiSI CCGG 2 cut(s) 465, 510
BslFI GGGAC 1 cut(s) 350
BsmAI GTCTC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 2 cut(s) 291, 448
BspCNI CTCAG 2 cut(s) 70, 322
BspQI GCTCTTC 2 cut(s) 123, 198
BsrFI RCCGGY 1 cut(s) 509
BsrI ACTGG 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 509
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 2 cut(s) 291, 448
Bst6I CTCTTC 3 cut(s) 58, 123, 198
BstAPI GCANNNNNTGC 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 258, 507
BstDEI CTNAG 3 cut(s) 57, 184, 330
BstDSI CCRYGG 1 cut(s) 25
BstEII GGTNACC 1 cut(s) 413
BstKTI GATC 2 cut(s) 294, 451
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 2 cut(s) 291, 448
BstMWI GCNNNNNNNGC 3 cut(s) 97, 176, 185
BstPI GGTNACC 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 464
BstV1I GCAGC 2 cut(s) 100, 200
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 258, 507
CaiI CAGNNNCTG 1 cut(s) 230
Cfr10I RCCGGY 1 cut(s) 509
CviAII CATG 1 cut(s) 359
CviJI RGCY 9 cut(s) 116, 170, 191, 209, 260, 329, 383, 469, 505
CviKI_1 RGCY 9 cut(s) 116, 170, 191, 209, 260, 329, 383, 469, 505
DdeI CTNAG 3 cut(s) 57, 184, 330
DpnI GATC 2 cut(s) 293, 450
DpnII GATC 2 cut(s) 291, 448
Eam1104I CTCTTC 3 cut(s) 58, 123, 198
EarI CTCTTC 3 cut(s) 58, 123, 198
Eco91I GGTNACC 1 cut(s) 413
EcoO65I GGTNACC 1 cut(s) 413
EcoRI GAATTC 1 cut(s) 282
FaeI CATG 1 cut(s) 362
FaiI YATR 6 cut(s) 206, 360, 365, 426, 453, 476
FaqI GGGAC 1 cut(s) 350
FatI CATG 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 89, 189
Fsp4HI GCNGC 2 cut(s) 89, 189
GluI GCNGC 2 cut(s) 89, 189
GsaI CCCAGC 1 cut(s) 219
HapII CCGG 2 cut(s) 465, 510
Hin1II CATG 1 cut(s) 362
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 3 cut(s) 102, 227, 272
HpaII CCGG 2 cut(s) 465, 510
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 4 cut(s) 60, 226, 232, 271
Hpy188III TCNNGA 4 cut(s) 287, 312, 407, 446
Hpy8I GTNNAC 1 cut(s) 154
HpyCH4IV ACGT 2 cut(s) 319, 386
HpyCH4V TGCA 3 cut(s) 88, 239, 256
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 176, 185
HpyF3I CTNAG 3 cut(s) 57, 184, 330
HpySE526I ACGT 2 cut(s) 319, 386
Hsp92II CATG 1 cut(s) 362
Kzo9I GATC 2 cut(s) 291, 448
LguI GCTCTTC 2 cut(s) 123, 198
LpnPI CCDG 6 cut(s) 51, 118, 201, 242, 431, 478
Lsp1109I GCAGC 2 cut(s) 100, 200
MaeII ACGT 2 cut(s) 319, 386
MaeIII GTNAC 2 cut(s) 413, 497
MalI GATC 2 cut(s) 293, 450
MboI GATC 2 cut(s) 291, 448
MboII GAAGA 4 cut(s) 45, 110, 185, 381
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 4 cut(s) 95, 262, 282, 393
MlyI GAGTC 2 cut(s) 111, 281
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 4 cut(s) 130, 160, 325, 471
MseI TTAA 2 cut(s) 77, 514
MspI CCGG 2 cut(s) 465, 510
MspR9I CCNGG 1 cut(s) 466
MwoI GCNNNNNNNGC 3 cut(s) 97, 176, 185
NciI CCSGG 1 cut(s) 466
NdeII GATC 2 cut(s) 291, 448
NlaIII CATG 1 cut(s) 362
NmuCI GTSAC 2 cut(s) 413, 497
PciSI GCTCTTC 2 cut(s) 123, 198
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 90, 190
PleI GAGTC 2 cut(s) 110, 280
PpsI GAGTC 2 cut(s) 110, 280
PspEI GGTNACC 1 cut(s) 413
PspFI CCCAGC 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 291
SapI GCTCTTC 2 cut(s) 123, 198
SaqAI TTAA 2 cut(s) 77, 514
SatI GCNGC 2 cut(s) 89, 189
Sau3AI GATC 2 cut(s) 291, 448
SchI GAGTC 2 cut(s) 111, 281
ScrFI CCNGG 1 cut(s) 466
SduI GDGCHC 1 cut(s) 319
SetI ASST 8 cut(s) 118, 141, 165, 193, 211, 322, 389, 507
Sse9I AATT 4 cut(s) 95, 262, 282, 393
StyD4I CCNGG 1 cut(s) 464
TaiI ACGT 2 cut(s) 322, 389
TasI AATT 4 cut(s) 95, 262, 282, 393
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 2 cut(s) 77, 514
Tru9I TTAA 2 cut(s) 77, 514
TseFI GTSAC 2 cut(s) 413, 497
TseI GCWGC 2 cut(s) 88, 188
Tsp45I GTSAC 2 cut(s) 413, 497
TspDTI ATGAA 2 cut(s) 347, 365
TspGWI ACGGA 1 cut(s) 42
XapI RAATTY 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.