Rroxscaffold_2G00111710

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000527
Physical Location & Seq
Forward (+)
36417101 .. 36433651
16551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111710.1

Sequence Viewer

Length: 741 bp
ATGAAGAACCCAAAGGAAGAGATCAGTTGTCTCCCATGTGGGATTTTCACCGCAGCTCGAAAGTCAAGGTGGGCACCAAACAAGCTTCGGAATCGGAAGCCGGAGTTGTTGCTAGTAGAGTATGAAACTCTTGTCGACAAAGACGACCCTTCGAAGCCGCCGTCGGAGGAAATCGAGGTGGGTTTGGTCCTGCCATTGCCACTTGCGGAGGAAGGGTTTAAGGTAAACGACGTCGTTGACGCGTTAAATTTGGACGCATGGTGGCCCGGTGTGGTGATCGGTGTTGTGGGGGAGAAGTACACGGTGGGGTTTAAGAGCCCGCCGGATTTACCGGAGATTGGGTGCCGGGAGCTGCATGCGGCGGCATTGGGATTGATGTTGTGGCGAGTGGAGTCGGGGAAAGAGAATGATGTAATAGAAACAATCACTCGAGAACTTAACAAACGATTAAGTCGTACGGAGGCTGAGTTTGTGTACAAGAGGTCGGAGTATGAAACTCTTGTCGATGAAGATGACCCTTCGAAGCGGGTTGACGAGAGAAAATCAAGGTGGGTTTGGTTCCGCCGTCGCCGCCCTGCAGAGGAGGGGTTTGAGGTAAACGACGTCGTTGACGCATTTAATTTGGACGCATGGTGGCCCGGGGTGGTGATGAGTGTTGTGGGGGAGAAGTACATGGTGGGGTTTAACGACGCGGATTTGCTAGAGATTGGGCGTGGGGAGTTGCGGCGGCATTGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

246

Amino Acids

28.25

Weight (kDa)

4.95

Isoelectric Point (pI)

58.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 234, 606
AccB1I GGYRCC 2 cut(s) 73, 342
AccI GTMKAC 1 cut(s) 135
AccII CGCG 2 cut(s) 242, 692
AcsI RAATTY 1 cut(s) 247
AcyI GRCGYC 2 cut(s) 231, 603
AfaI GTAC 4 cut(s) 299, 457, 476, 671
AfiI CCNNNNNNNGG 2 cut(s) 338, 580
AflIII ACRYGT 1 cut(s) 240
AluBI AGCT 3 cut(s) 56, 85, 352
AluI AGCT 3 cut(s) 56, 85, 352
Alw26I GTCTC 1 cut(s) 35
Ama87I CYCGRG 2 cut(s) 429, 638
AoxI GGCC 2 cut(s) 263, 635
ApeKI GCWGC 2 cut(s) 53, 352
ApoI RAATTY 1 cut(s) 247
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspS9I GGNCC 3 cut(s) 187, 264, 636
AsuC2I CCSGG 4 cut(s) 267, 347, 639, 640
AsuHPI GGTGA 3 cut(s) 40, 286, 658
AsuII TTCGAA 2 cut(s) 152, 521
AvaI CYCGRG 2 cut(s) 429, 638
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 2 cut(s) 73, 342
BanII GRGCYC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 65, 339
BceAI ACGGC 2 cut(s) 145, 549
BcnI CCSGG 4 cut(s) 267, 347, 639, 640
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 2 cut(s) 113, 701
BfmI CTRYAG 1 cut(s) 576
BisI GCNGC 8 cut(s) 54, 158, 353, 360, 363, 571, 725, 728
BlsI GCNGC 8 cut(s) 55, 159, 354, 361, 364, 572, 726, 729
Bme1390I CCNGG 4 cut(s) 267, 347, 639, 640
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 2 cut(s) 429, 638
BmgT120I GGNCC 3 cut(s) 187, 264, 636
BmiI GGNNCC 3 cut(s) 75, 344, 560
BmrFI CCNGG 4 cut(s) 267, 347, 639, 640
Bpu14I TTCGAA 2 cut(s) 152, 521
BpuMI CCSGG 4 cut(s) 267, 347, 639, 640
BsaHI GRCGYC 2 cut(s) 231, 603
BsaJI CCNNGG 2 cut(s) 638, 639
BsaWI WCCGGW 1 cut(s) 331
BsaXI ACNNNNNCTCC 6 cut(s) 200, 230, 326, 356, 452, 482
Bsc4I CCNNNNNNNGG 2 cut(s) 338, 580
Bse3DI GCAATG 1 cut(s) 194
BseDI CCNNGG 2 cut(s) 638, 639
BseLI CCNNNNNNNGG 2 cut(s) 338, 580
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 456
BseRI GAGGAG 1 cut(s) 596
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 2 cut(s) 65, 339
Bsh1236I CGCG 2 cut(s) 242, 692
BshFI GGCC 2 cut(s) 265, 637
BshNI GGYRCC 2 cut(s) 73, 342
BsiHKCI CYCGRG 2 cut(s) 429, 638
BsiSI CCGG 6 cut(s) 101, 267, 323, 332, 346, 639
BsiWI CGTACG 1 cut(s) 455
BslI CCNNNNNNNGG 2 cut(s) 338, 580
BsmAI GTCTC 1 cut(s) 35
BsnI GGCC 2 cut(s) 265, 637
BsoBI CYCGRG 2 cut(s) 429, 638
Bsp119I TTCGAA 2 cut(s) 152, 521
Bsp1286I GDGCHC 2 cut(s) 76, 320
Bsp1407I TGTACA 1 cut(s) 474
Bsp143I GATC 2 cut(s) 21, 276
BspANI GGCC 2 cut(s) 265, 637
BspCNI CTCAG 1 cut(s) 457
BspFNI CGCG 2 cut(s) 242, 692
BspLI GGNNCC 3 cut(s) 75, 344, 560
BspMAI CTGCAG 1 cut(s) 580
BspT104I TTCGAA 2 cut(s) 152, 521
BspT107I GGYRCC 2 cut(s) 73, 342
BsrDI GCAATG 1 cut(s) 194
BsrGI TGTACA 1 cut(s) 474
BssECI CCNNGG 2 cut(s) 638, 639
BssMI GATC 2 cut(s) 21, 276
BssNI GRCGYC 2 cut(s) 231, 603
Bst4CI ACNGT 1 cut(s) 304
Bst6I CTCTTC 1 cut(s) 12
BstACI GRCGYC 2 cut(s) 231, 603
BstAUI TGTACA 1 cut(s) 474
BstBI TTCGAA 2 cut(s) 152, 521
BstC8I GCNNGC 2 cut(s) 320, 357
BstDEI CTNAG 1 cut(s) 465
BstFNI CGCG 2 cut(s) 242, 692
BstKTI GATC 2 cut(s) 24, 279
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 2 cut(s) 21, 276
BstMWI GCNNNNNNNGC 1 cut(s) 570
BstNSI RCATGY 1 cut(s) 359
BstSCI CCNGG 4 cut(s) 265, 345, 637, 638
BstSFI CTRYAG 1 cut(s) 576
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 2 cut(s) 242, 692
BstV1I GCAGC 2 cut(s) 65, 339
BsuRI GGCC 2 cut(s) 265, 637
Cac8I GCNNGC 2 cut(s) 320, 357
Cfr13I GGNCC 3 cut(s) 187, 264, 636
Cfr9I CCCGGG 1 cut(s) 638
CseI GACGC 5 cut(s) 248, 263, 620, 635, 698
Csp6I GTAC 4 cut(s) 298, 456, 475, 670
CviAII CATG 5 cut(s) 36, 258, 356, 630, 673
CviJI RGCY 9 cut(s) 56, 85, 100, 157, 265, 318, 352, 464, 637
CviKI_1 RGCY 9 cut(s) 56, 85, 100, 157, 265, 318, 352, 464, 637
CviQI GTAC 4 cut(s) 298, 456, 475, 670
DdeI CTNAG 1 cut(s) 465
DpnI GATC 2 cut(s) 23, 278
DpnII GATC 2 cut(s) 21, 276
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
EciI GGCGGA 1 cut(s) 551
Eco24I GRGCYC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 187
Eco88I CYCGRG 2 cut(s) 429, 638
EcoT38I GRGCYC 1 cut(s) 320
FaeI CATG 5 cut(s) 39, 261, 359, 633, 676
FaiI YATR 7 cut(s) 37, 123, 259, 357, 492, 631, 674
FatI CATG 5 cut(s) 35, 257, 355, 629, 672
FauI CCCGC 2 cut(s) 327, 519
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 8 cut(s) 54, 158, 353, 360, 363, 571, 725, 728
FriOI GRGCYC 1 cut(s) 320
Fsp4HI GCNGC 8 cut(s) 54, 158, 353, 360, 363, 571, 725, 728
FspBI CTAG 2 cut(s) 113, 701
GluI GCNGC 8 cut(s) 54, 158, 353, 360, 363, 571, 725, 728
HaeIII GGCC 2 cut(s) 265, 637
HapII CCGG 6 cut(s) 101, 267, 323, 332, 346, 639
HgaI GACGC 5 cut(s) 248, 263, 620, 635, 698
Hin1I GRCGYC 2 cut(s) 231, 603
Hin1II CATG 5 cut(s) 39, 261, 359, 633, 676
HincII GTYRAC 4 cut(s) 136, 238, 532, 610
HindII GTYRAC 4 cut(s) 136, 238, 532, 610
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 2 cut(s) 91, 392
HpaII CCGG 6 cut(s) 101, 267, 323, 332, 346, 639
HphI GGTGA 3 cut(s) 40, 286, 658
Hpy166II GTNNAC 8 cut(s) 136, 226, 238, 300, 475, 532, 598, 610
Hpy188I TCNGA 4 cut(s) 90, 96, 166, 487
Hpy188III TCNNGA 1 cut(s) 431
Hpy8I GTNNAC 8 cut(s) 136, 226, 238, 300, 475, 532, 598, 610
Hpy99I CGWCG 7 cut(s) 166, 233, 236, 570, 605, 608, 692
HpyAV CCTTC 3 cut(s) 159, 206, 528
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 2 cut(s) 231, 603
HpyCH4V TGCA 2 cut(s) 355, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 570
HpyF3I CTNAG 1 cut(s) 465
HpySE526I ACGT 2 cut(s) 231, 603
Hsp92I GRCGYC 2 cut(s) 231, 603
Hsp92II CATG 5 cut(s) 39, 261, 359, 633, 676
Kzo9I GATC 2 cut(s) 21, 276
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 8 cut(s) 114, 203, 280, 336, 345, 359, 588, 652
Lsp1109I GCAGC 2 cut(s) 65, 339
MaeI CTAG 2 cut(s) 113, 701
MaeII ACGT 2 cut(s) 231, 603
MalI GATC 2 cut(s) 23, 278
MboI GATC 2 cut(s) 21, 276
MboII GAAGA 3 cut(s) 16, 29, 521
MhlI GDGCHC 2 cut(s) 76, 320
MluCI AATT 2 cut(s) 247, 619
MluI ACGCGT 1 cut(s) 240
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 2 cut(s) 144, 465
MnlI CCTC 8 cut(s) 160, 169, 202, 454, 474, 574, 577, 586
MseI TTAA 7 cut(s) 219, 245, 312, 438, 449, 618, 684
MspI CCGG 6 cut(s) 101, 267, 323, 332, 346, 639
MspR9I CCNGG 4 cut(s) 267, 347, 639, 640
MvnI CGCG 2 cut(s) 242, 692
MwoI GCNNNNNNNGC 1 cut(s) 570
NciI CCSGG 4 cut(s) 267, 347, 639, 640
NdeII GATC 2 cut(s) 21, 276
NlaIII CATG 5 cut(s) 39, 261, 359, 633, 676
NlaIV GGNNCC 3 cut(s) 75, 344, 560
NspI RCATGY 1 cut(s) 359
NspV TTCGAA 2 cut(s) 152, 521
PaeI GCATGC 1 cut(s) 359
PaeR7I CTCGAG 1 cut(s) 429
PcsI WCGNNNNNNNCGW 3 cut(s) 141, 158, 451
PfeI GAWTC 1 cut(s) 91
Pfl23II CGTACG 1 cut(s) 455
PkrI GCNGC 8 cut(s) 55, 159, 354, 361, 364, 572, 726, 729
PleI GAGTC 1 cut(s) 400
PpsI GAGTC 1 cut(s) 400
PspLI CGTACG 1 cut(s) 455
PspN4I GGNNCC 3 cut(s) 75, 344, 560
PspPI GGNCC 3 cut(s) 187, 264, 636
PstI CTGCAG 1 cut(s) 580
RsaI GTAC 4 cut(s) 299, 457, 476, 671
RsaNI GTAC 4 cut(s) 298, 456, 475, 670
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 7 cut(s) 219, 245, 312, 438, 449, 618, 684
SatI GCNGC 8 cut(s) 54, 158, 353, 360, 363, 571, 725, 728
Sau3AI GATC 2 cut(s) 21, 276
Sau96I GGNCC 3 cut(s) 187, 264, 636
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 4 cut(s) 267, 347, 639, 640
SduI GDGCHC 2 cut(s) 76, 320
SfcI CTRYAG 1 cut(s) 576
Sfr274I CTCGAG 1 cut(s) 429
SfuI TTCGAA 2 cut(s) 152, 521
SinI GGWCC 1 cut(s) 187
SlaI CTCGAG 1 cut(s) 429
SmaI CCCGGG 1 cut(s) 640
SmlI CTYRAG 1 cut(s) 429
SmoI CTYRAG 1 cut(s) 429
SphI GCATGC 1 cut(s) 359
Sse9I AATT 2 cut(s) 247, 619
SspMI CTAG 2 cut(s) 113, 701
StyD4I CCNGG 4 cut(s) 265, 345, 637, 638
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 2 cut(s) 234, 606
TaqI TCGA 7 cut(s) 58, 135, 152, 174, 430, 504, 521
TasI AATT 2 cut(s) 247, 619
TatI WGTACW 3 cut(s) 297, 474, 669
TauI GCSGC 6 cut(s) 160, 362, 365, 573, 727, 730
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 7 cut(s) 219, 245, 312, 438, 449, 618, 684
Tru9I TTAA 7 cut(s) 219, 245, 312, 438, 449, 618, 684
TseI GCWGC 2 cut(s) 53, 352
TspDTI ATGAA 4 cut(s) 17, 138, 507, 522
TspGWI ACGGA 1 cut(s) 473
TspMI CCCGGG 1 cut(s) 638
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 247
XceI RCATGY 1 cut(s) 359
XhoI CTCGAG 1 cut(s) 429
XmaI CCCGGG 1 cut(s) 638
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 2 cut(s) 113, 701
ZraI GACGTC 2 cut(s) 232, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.