pycom07g27230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000527
Physical Location & Seq
Forward (+)
27000945 .. 27002426
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g27230.1

Sequence Viewer

Length: 297 bp
ATGCACACGTGTTGCTCATCGTGTAAGGGAAGTAGGTTGGAAAAGCAAGGGCTCTTTCATTTGCTTCCTTCTGCTGTGTTTCCTTTTCACTGCTTTTGGTCCATTTATTTTTTCCCATTTCTTTTGCTTCTCTTCTTTCGTAGCCGTCTGCTCTCTCATCTCTTCGCCTCTGTTGGTCTCAAAGTGGATAGTTTTGTGAAGATTGAGAAACAAAAAGTTGGAGGACTGGATGATCAAGTATTAACCCATTTTAAAAGAAAATGTAAACCAAGAAAATCCCAAAGTGATATCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.35

Weight (kDa)

9.72

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 9
AflIII ACRYGT 2 cut(s) 6, 8
Alw26I GTCTC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 99
AvaII GGWCC 1 cut(s) 99
BanII GRGCYC 1 cut(s) 54
BbrPI CACGTG 1 cut(s) 9
BceAI ACGGC 1 cut(s) 129
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 99
BsaAI YACGTR 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 231
BseGI GGATG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 182
BsrI ACTGG 1 cut(s) 231
BssMI GATC 1 cut(s) 232
Bst6I CTCTTC 2 cut(s) 137, 167
BstBAI YACGTR 1 cut(s) 9
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 1 cut(s) 232
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 99
CviAII CATG 1 cut(s) 294
CviJI RGCY 2 cut(s) 52, 144
CviKI_1 RGCY 2 cut(s) 52, 144
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
DraI TTTAAA 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 137, 167
EarI CTCTTC 2 cut(s) 137, 167
Eco24I GRGCYC 1 cut(s) 54
Eco31I GGTCTC 1 cut(s) 182
Eco32I GATATC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 99
Eco72I CACGTG 1 cut(s) 9
EcoRV GATATC 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 54
FaeI CATG 1 cut(s) 297
FaiI YATR 1 cut(s) 295
FatI CATG 1 cut(s) 293
FbaI TGATCA 1 cut(s) 232
FokI GGATG 1 cut(s) 242
FriOI GRGCYC 1 cut(s) 54
Hin1II CATG 1 cut(s) 297
Hpy166II GTNNAC 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 4
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 1 cut(s) 232
LpnPI CCDG 1 cut(s) 212
MaeII ACGT 1 cut(s) 8
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 3 cut(s) 124, 154, 211
MhlI GDGCHC 1 cut(s) 54
MmeI TCCRAC 2 cut(s) 18, 199
MnlI CCTC 2 cut(s) 178, 215
MseI TTAA 2 cut(s) 242, 252
NdeII GATC 1 cut(s) 232
NlaIII CATG 1 cut(s) 297
PmaCI CACGTG 1 cut(s) 9
PmlI CACGTG 1 cut(s) 9
Ppu21I YACGTR 1 cut(s) 9
PspCI CACGTG 1 cut(s) 9
PspPI GGNCC 1 cut(s) 99
SaqAI TTAA 2 cut(s) 242, 252
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 1 cut(s) 99
SduI GDGCHC 1 cut(s) 54
SetI ASST 2 cut(s) 11, 38
SgeI CNNG 7 cut(s) 19, 21, 33, 59, 239, 248, 282
SinI GGWCC 1 cut(s) 99
TaiI ACGT 1 cut(s) 11
Tru1I TTAA 2 cut(s) 242, 252
Tru9I TTAA 2 cut(s) 242, 252
TscAI CASTG 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 47
TspRI CASTG 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.