Rh7AG386700

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000527
Physical Location & Seq
Forward (+)
50705744 .. 50706169
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG386700.1

Sequence Viewer

Length: 426 bp
ATGAAGAACCCGAATGAGGATATCAGTTGTCTCCCATGTGGAATTTTCAGCTGCGGCTCGAAAGTTGAGGTGGGCACCAAACAAGGTGCATGGTTTCTTGCTTATGTCCTAGACCCAAATCAGAACCAGTCCCCATTCTTGGTTCAGAATCGGAAGCCGAAGTTGTTAGTAGAGTATGAAACTCTTGTCGATGAAGATGACCCTTCTAAGCCGTTAACAGAGGAAATCGAGGTGAGTTTGGTCCAGCCGTCGCCGCTTGCGGAGGAGGGGTTTGAGGTAAACGACGTCGTTGATGCGTTTAATTTGGACACAATGTGGCCCGGGGTGGTGATGAGTGTTGTGGGGGAAAAGTACACGGCGGGGTTTAAGAGCCCGCCAGATTTGCTGGAGATTGGGCGCGGGGAGCTATGGCGGCGAGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

141

Amino Acids

15.72

Weight (kDa)

4.36

Isoelectric Point (pI)

46.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 19 - 85 7.4e-09 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 74
AccII CGCG 1 cut(s) 399
AciI CCGC 7 cut(s) 54, 254, 260, 359, 374, 399, 412
AcsI RAATTY 1 cut(s) 42
AcyI GRCGYC 1 cut(s) 285
AdeI CACNNNGTG 1 cut(s) 315
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 2 cut(s) 16, 139
AluBI AGCT 2 cut(s) 51, 406
AluI AGCT 2 cut(s) 51, 406
Alw26I GTCTC 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 42
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 2 cut(s) 241, 318
AsuC2I CCSGG 2 cut(s) 321, 322
AsuHPI GGTGA 2 cut(s) 244, 340
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 1 cut(s) 241
BaeGI GKGCMC 1 cut(s) 77
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 374
BbvI GCAGC 1 cut(s) 38
BceAI ACGGC 3 cut(s) 196, 232, 372
BcnI CCSGG 2 cut(s) 321, 322
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 1 cut(s) 110
BisI GCNGC 4 cut(s) 52, 55, 254, 413
BlsI GCNGC 4 cut(s) 53, 56, 255, 414
Bme1390I CCNGG 2 cut(s) 321, 322
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 241, 318
BmiI GGNNCC 1 cut(s) 76
BmrFI CCNGG 2 cut(s) 321, 322
BmsI GCATC 1 cut(s) 283
BpmI CTGGAG 1 cut(s) 407
BpuMI CCSGG 2 cut(s) 321, 322
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 320, 321
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 139
Bse1I ACTGG 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 320, 321
BseLI CCNNNNNNNGG 2 cut(s) 16, 139
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 399
BshFI GGCC 1 cut(s) 319
BshNI GGYRCC 1 cut(s) 74
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 1 cut(s) 321
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 16, 139
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 1 cut(s) 319
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 77, 374
BspACI CCGC 7 cut(s) 54, 254, 260, 359, 374, 399, 412
BspANI GGCC 1 cut(s) 319
BspFNI CGCG 1 cut(s) 399
BspLI GGNNCC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 320, 321
BssNI GRCGYC 1 cut(s) 285
BstACI GRCGYC 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 258, 374
BstDEI CTNAG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 399
BstHHI GCGC 1 cut(s) 399
BstMAI GTCTC 1 cut(s) 35
BstMWI GCNNNNNNNGC 4 cut(s) 253, 382, 403, 412
BstSCI CCNGG 2 cut(s) 319, 320
BstSLI GKGCMC 1 cut(s) 77
BstUI CGCG 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 38
BsuRI GGCC 1 cut(s) 319
Cac8I GCNNGC 2 cut(s) 258, 374
CfoI GCGC 1 cut(s) 399
Cfr13I GGNCC 2 cut(s) 241, 318
Cfr9I CCCGGG 1 cut(s) 320
Csp6I GTAC 1 cut(s) 352
CviAII CATG 2 cut(s) 36, 90
CviJI RGCY 8 cut(s) 51, 57, 157, 211, 247, 319, 372, 406
CviKI_1 RGCY 8 cut(s) 51, 57, 157, 211, 247, 319, 372, 406
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 1 cut(s) 207
DraIII CACNNNGTG 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 374
Eco32I GATATC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 320
EcoRV GATATC 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 374
FaeI CATG 2 cut(s) 39, 93
FaiI YATR 5 cut(s) 37, 91, 105, 177, 409
FaqI GGGAC 1 cut(s) 115
FatI CATG 2 cut(s) 35, 89
FauI CCCGC 3 cut(s) 352, 381, 392
Fnu4HI GCNGC 4 cut(s) 52, 55, 254, 413
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 4 cut(s) 52, 55, 254, 413
FspBI CTAG 1 cut(s) 110
GlaI GCGC 1 cut(s) 398
GluI GCNGC 4 cut(s) 52, 55, 254, 413
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 1 cut(s) 319
HapII CCGG 1 cut(s) 321
HhaI GCGC 1 cut(s) 399
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 2 cut(s) 39, 93
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HincII GTYRAC 1 cut(s) 216
HindII GTYRAC 1 cut(s) 216
HinfI GANTC 1 cut(s) 148
HpaI GTTAAC 1 cut(s) 216
HpaII CCGG 1 cut(s) 321
HphI GGTGA 2 cut(s) 244, 340
Hpy166II GTNNAC 3 cut(s) 216, 280, 354
Hpy188I TCNGA 3 cut(s) 123, 147, 153
Hpy8I GTNNAC 3 cut(s) 216, 280, 354
Hpy99I CGWCG 3 cut(s) 253, 287, 290
HpyAV CCTTC 1 cut(s) 213
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 4 cut(s) 253, 382, 403, 412
HpyF3I CTNAG 1 cut(s) 207
HpySE526I ACGT 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 2 cut(s) 39, 93
HspAI GCGC 1 cut(s) 397
KspAI GTTAAC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 403
LpnPI CCDG 5 cut(s) 140, 257, 334, 371, 390
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 1 cut(s) 283
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 285
MboII GAAGA 2 cut(s) 16, 206
MhlI GDGCHC 2 cut(s) 77, 374
MluCI AATT 2 cut(s) 42, 301
MnlI CCTC 7 cut(s) 10, 61, 214, 223, 256, 259, 268
MseI TTAA 3 cut(s) 215, 300, 366
MspA1I CMGCKG 1 cut(s) 51
MspI CCGG 1 cut(s) 321
MspR9I CCNGG 2 cut(s) 321, 322
MvnI CGCG 1 cut(s) 399
MwoI GCNNNNNNNGC 4 cut(s) 253, 382, 403, 412
NciI CCSGG 2 cut(s) 321, 322
NlaIII CATG 2 cut(s) 39, 93
NlaIV GGNNCC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 148
PkrI GCNGC 4 cut(s) 53, 56, 255, 414
PspN4I GGNNCC 1 cut(s) 76
PspPI GGNCC 2 cut(s) 241, 318
PvuII CAGCTG 1 cut(s) 51
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SaqAI TTAA 3 cut(s) 215, 300, 366
SatI GCNGC 4 cut(s) 52, 55, 254, 413
Sau96I GGNCC 2 cut(s) 241, 318
ScrFI CCNGG 2 cut(s) 321, 322
SduI GDGCHC 2 cut(s) 77, 374
SetI ASST 7 cut(s) 53, 72, 88, 234, 279, 288, 408
SfaNI GCATC 1 cut(s) 283
SinI GGWCC 1 cut(s) 241
SmaI CCCGGG 1 cut(s) 322
Sse9I AATT 2 cut(s) 42, 301
SsiI CCGC 7 cut(s) 54, 254, 260, 359, 374, 399, 412
SspMI CTAG 1 cut(s) 110
StyD4I CCNGG 2 cut(s) 319, 320
TaiI ACGT 1 cut(s) 288
TaqI TCGA 3 cut(s) 59, 189, 228
TasI AATT 2 cut(s) 42, 301
TatI WGTACW 1 cut(s) 351
TauI GCSGC 3 cut(s) 57, 256, 415
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 3 cut(s) 215, 300, 366
Tru9I TTAA 3 cut(s) 215, 300, 366
TseI GCWGC 1 cut(s) 51
TspDTI ATGAA 3 cut(s) 17, 192, 207
TspMI CCCGGG 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 42
XmaI CCCGGG 1 cut(s) 320
XspI CTAG 1 cut(s) 110
ZraI GACGTC 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.