Rh1BG348300

agenet domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000527
Physical Location & Seq
Reverse (-)
48123772 .. 48127653
3882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG348300.1

Sequence Viewer

Length: 2406 bp
ATGAAGAGCCCGAAGGAGGAGATCAGTTGTCTCCCATGTGGGTATTTCAGCCGCGGCGCGAAAGTCGAGGTTCGCGACGAGCAAGGTGCATGGTTTCCTGCTCATGTCCTGGACCCAAATCCAAACCCGTCCCCATTCTCGCTTCGGAATCGGAAGCACAAGTTGCTGGTGGTAGAGTATGAAACTCTCGTCTCCGACGACGACCCTTTGAAGCCGCTGACGGAGGAAATCGAGGTGGGTATGCTCCGGCCGTCGCCGCCTGCGGAGGAGGAGGAGGGGTTGGAGGTAAACGACGTCGTTGACGCGTTTAATCTGGACGCGTGGTGGCCCGGGGTGGTGATGAGTGTTGTGGGGGACAAGTACACGGTGGGGTTTAAGAGCCCGCCGGATTTGCTGGAGCTTGGGCGCGGCGAGCTGCGGCGCCATTGGGATTGGGATTCGCGCGGCGGCGAGTGGACTCGCGCCGGGAAGGAGATGATGATGCGATTGGATTTCAGCCCTGGGGAAGATGTTGAAGTGAACCTACACAAAGAACGTGTATGGTATGCTTGGATACCGGCAATTTATGTTGGTCCATTAGGGGGCAATTCTTTCCTGATCCGTTATAAGGGTGCGAATAATAGTCATGAAAATGGTTTTGTTAAAGTTGTATCGGACTATCAGATTCGACCTCTTCCTCCGCAGCAAGAGGAGAGAGCTTTTGAATTGTTGGGAATGGTGGATGCATACCTAGATATGTGTTGGTGGGTTGGAGACATTACAAAAGTTCTTACAGGGGAAAGGTATGTTGTCACATTAAGATTCACAAAGCAGGAGAGGGAATTCAGATCGGCAGACCTGAGGCACCACTCAGAATGGATTGGTAGCAAATGGGTGTCTGACCCTAAGGCACTTGAAAATTCTATTGTCAATGAAGAACGATTAAGATATACAAGAAGCAATTACAGAAAATCCGAAGAAAAAACACCTTGTCATACTAAGTCTCAAATGAAGCAGTTGACTTGTCTTGTGAATAAATCACCTTACGGAAATACCATTAAGAAACTCAAATTATCTGAGCTTTCTAATGATGGTGCAACATTTTCAAGTCCAACTCCTTCAAAGAAGTTAAAAGGGGAACGCTCAGAAGACTCCTTATCTTTGTCAGCATTATTTGGCAGGGAAAAATCAATTAAAACATCCAACAGAAAAGGGCCTTTTGAAGATGGAGAGAAGTCTGAGCAACAACATATCGGGCAACTGGATGGTGAAGTAACCACTCCCGTAAAAAGAAGGGGTGGACGACGAAAATCACAAGCTGATAGCCCATCCCCTGGTGTTAGACAGGGTACAAAGGCTAGACGACCAAAATTGCATGTCAAGAAGAGCAGTGGAATTGACAAAGCATATGAACAAAATCCTGAAGATGAGCATTTAATTAACGGAATTGAATCTTCTGGGATCGGTTCGGAGAATGAAGTAATGGGGGGATCAAAGGCTGGAAGCTCATGTCTGCTCCCTATGGAGGATAACCAACAACATAATGAAGATGGAGCAAGCAGTGGAATAAAGCTGAAGAGAAAACTGCCTATGTTAGTTGTTGAACACTCAAAAGATCCAACAACAGGTTCTGGAGATTCGGTGAGAGATGGCCGAGCTGTAGCTTCTGTAGAGAAAGTTAAGCTGGCTGTGTCTGGAATTCCTGCAAAGGAACCTGATCATGATCAATCTTTATTCATAAAGGAAGGGAATTCTGTAATAACCGTGGAGGGATCAATAAGTGGAAGAAAACTTGAAACTGGAGTCAAAGGTGATGTGGAGCAAGAAGACGGTCCAAATTTGCCTTTTGTGAAAAGTATCCCACTTTGGGAAAAGATTGAATCCATGGAAGTATTCAAAAGATTTCCACAGAAGCCGCATTTTCATCCTCTACTGAAAACTAAAGAGGTGTTTCGTGAGGGATCGGCTTTCGGAAAAATGTTAGCCTTTAGCTCTTTGGTAGATCAGACCTCCAAGATACGGATTGGTGATCCTAGAGACGTCATTGATAGCCACTTGGAAGCGACAGTTGCATTGGAACTGCACGGCTTTGATGTTGATGCCATAAAGCGTCGTCTGACTGGGTTGCTAGACCTGAAAGTCAAGCTGGAGGAGCTTCAAAACCAGTCCAAAGTAGTTGAAACCAAGATCACGGCGTGTAGACAAAACACAATCAAGGACACTGAAACTATCGGTAGAATTGACAAGGAGATCAAGGACTTAGAAGCAAACATCAAGGGCTTGAAGAAAAAACGGGCCATGGTAGTGTCAATGTGTTCGGCCAAAGATTCCGAGGTTAGCAAATTGCAGTCAGAAGCAAAAGTTATCAGTGAAGGCATCCAGAGCATCCAACATGGTTTCAACATACTAGCTGCTGCTCCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

801

Amino Acids

89.55

Weight (kDa)

6.87

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 19 - 87 1.8e-09 Agenet domain
DUF724 PF05266 607 - 800 1.9e-52 Protein of unknown function (DUF724)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AasI GACNNNNNNGTC 1 cut(s) 2117
AatII GACGTC 2 cut(s) 297, 2022
AccB1I GGYRCC 2 cut(s) 420, 843
AccB7I CCANNNNNTGG 1 cut(s) 1313
AccI GTMKAC 1 cut(s) 2179
AccII CGCG 9 cut(s) 54, 59, 75, 305, 320, 408, 442, 444, 462
AclWI GGATC 7 cut(s) 592, 1448, 1477, 1589, 1759, 1948, 2003
AcoI YGGCCR 3 cut(s) 248, 1630, 2298
AcsI RAATTY 5 cut(s) 821, 898, 1677, 1729, 1816
AcuI CTGAAG 2 cut(s) 1422, 1574
AcyI GRCGYC 3 cut(s) 294, 421, 2019
AdeI CACNNNGTG 1 cut(s) 2175
AfaI GTAC 2 cut(s) 362, 1330
AfiI CCNNNNNNNGG 8 cut(s) 16, 581, 607, 1313, 1504, 1604, 1846, 1998
AflIII ACRYGT 3 cut(s) 303, 318, 535
AjnI CCWGG 3 cut(s) 108, 499, 1312
AjuI GAANNNNNNNTTGG 2 cut(s) 1591, 1623
Alw26I GTCTC 5 cut(s) 35, 196, 747, 987, 2010
AlwI GGATC 7 cut(s) 592, 1448, 1477, 1589, 1759, 1948, 2003
AlwNI CAGNNNCTG 1 cut(s) 1610
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 6 cut(s) 248, 326, 1193, 1630, 2274, 2298
ApeKI GCWGC 4 cut(s) 415, 682, 2390, 2393
ApoI RAATTY 5 cut(s) 821, 898, 1677, 1729, 1816
AspLEI GCGC 5 cut(s) 59, 408, 423, 444, 464
AspS9I GGNCC 6 cut(s) 112, 327, 572, 1193, 1811, 2274
AsuC2I CCSGG 3 cut(s) 330, 331, 466
AsuHPI GGTGA 6 cut(s) 349, 1011, 1259, 1633, 1802, 2018
AvaI CYCGRG 1 cut(s) 329
AvaII GGWCC 3 cut(s) 112, 572, 1811
AxyI CCTNAGG 2 cut(s) 839, 885
BanI GGYRCC 2 cut(s) 420, 843
BanII GRGCYC 2 cut(s) 11, 383
BarI GAAGNNNNNNTAC 2 cut(s) 507, 539
BbsI GAAGAC 2 cut(s) 1134, 1812
BbvI GCAGC 4 cut(s) 402, 694, 2377, 2380
BccI CCATC 6 cut(s) 1064, 1199, 1238, 1315, 1523, 1622
BceAI ACGGC 3 cut(s) 235, 2080, 2187
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BciT130I CCWGG 3 cut(s) 110, 501, 1314
BciVI GTATCC 2 cut(s) 546, 1847
BclI TGATCA 2 cut(s) 1696, 1702
BcnI CCSGG 3 cut(s) 330, 331, 466
BcoDI GTCTC 5 cut(s) 35, 196, 747, 987, 2010
BfaI CTAG 5 cut(s) 731, 1338, 2013, 2108, 2387
BfmI CTRYAG 2 cut(s) 1638, 1647
BfoI RGCGCY 1 cut(s) 424
BfuI GTATCC 2 cut(s) 546, 1847
Bme1390I CCNGG 6 cut(s) 110, 330, 331, 466, 501, 1314
Bme18I GGWCC 3 cut(s) 112, 572, 1811
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 6 cut(s) 112, 327, 572, 1193, 1811, 2274
BmiI GGNNCC 4 cut(s) 114, 422, 845, 1692
BmrFI CCNGG 6 cut(s) 110, 330, 331, 466, 501, 1314
BmrI ACTGGG 1 cut(s) 2109
BmsI GCATC 5 cut(s) 471, 712, 2068, 2364, 2373
BmuI ACTGGG 1 cut(s) 2109
BpiI GAAGAC 2 cut(s) 1134, 1812
BpmI CTGGAG 4 cut(s) 416, 1632, 1800, 2147
BpuMI CCSGG 3 cut(s) 330, 331, 466
BsaBI GATNNNNATC 1 cut(s) 1701
BsaHI GRCGYC 3 cut(s) 294, 421, 2019
BsaXI ACNNNNNCTCC 4 cut(s) 263, 293, 1605, 1635
Bsc4I CCNNNNNNNGG 8 cut(s) 16, 581, 607, 1313, 1504, 1604, 1846, 1998
Bse118I RCCGGY 1 cut(s) 556
Bse1I ACTGG 4 cut(s) 1245, 1783, 2104, 2143
Bse21I CCTNAGG 2 cut(s) 839, 885
Bse8I GATNNNNATC 1 cut(s) 1701
BseBI CCWGG 3 cut(s) 110, 501, 1314
BseGI GGATG 7 cut(s) 727, 1178, 1249, 1307, 1903, 2355, 2364
BseJI GATNNNNATC 1 cut(s) 1701
BseLI CCNNNNNNNGG 8 cut(s) 16, 581, 607, 1313, 1504, 1604, 1846, 1998
BseMII CTCAG 5 cut(s) 830, 864, 1047, 1137, 1209
BseNI ACTGG 4 cut(s) 1245, 1783, 2104, 2143
BseRI GAGGAG 6 cut(s) 32, 281, 284, 287, 704, 2144
BseX3I CGGCCG 1 cut(s) 248
BseXI GCAGC 4 cut(s) 402, 694, 2377, 2380
BsgI GTGCAG 1 cut(s) 2045
Bsh1236I CGCG 9 cut(s) 54, 59, 75, 305, 320, 408, 442, 444, 462
Bsh1285I CGRYCG 1 cut(s) 251
BshFI GGCC 6 cut(s) 250, 328, 1195, 1632, 2276, 2300
BshNI GGYRCC 2 cut(s) 420, 843
BsiEI CGRYCG 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 5 cut(s) 247, 330, 386, 465, 557
BslFI GGGAC 2 cut(s) 115, 368
BslI CCNNNNNNNGG 8 cut(s) 16, 581, 607, 1313, 1504, 1604, 1846, 1998
BsmAI GTCTC 5 cut(s) 35, 196, 747, 987, 2010
BsmBI CGTCTC 2 cut(s) 196, 2010
BsmFI GGGAC 2 cut(s) 115, 368
BsnI GGCC 6 cut(s) 250, 328, 1195, 1632, 2276, 2300
BsoBI CYCGRG 1 cut(s) 329
Bsp1286I GDGCHC 2 cut(s) 11, 383
Bsp19I CCATGG 2 cut(s) 1863, 2277
Bsp68I TCGCGA 1 cut(s) 75
BspANI GGCC 6 cut(s) 250, 328, 1195, 1632, 2276, 2300
BspCNI CTCAG 5 cut(s) 831, 863, 1048, 1136, 1210
BspFNI CGCG 9 cut(s) 54, 59, 75, 305, 320, 408, 442, 444, 462
BspHI TCATGA 2 cut(s) 625, 1699
BspLI GGNNCC 4 cut(s) 114, 422, 845, 1692
BspPI GGATC 7 cut(s) 592, 1448, 1477, 1589, 1759, 1948, 2003
BspQI GCTCTTC 1 cut(s) 1358
BspT107I GGYRCC 2 cut(s) 420, 843
BsrFI RCCGGY 1 cut(s) 556
BsrI ACTGG 4 cut(s) 1245, 1783, 2104, 2143
BssAI RCCGGY 1 cut(s) 556
BssNI GRCGYC 3 cut(s) 294, 421, 2019
BssT1I CCWWGG 2 cut(s) 1863, 2277
Bst2UI CCWGG 3 cut(s) 110, 501, 1314
Bst4CI ACNGT 4 cut(s) 367, 1744, 1811, 2047
Bst6I CTCTTC 3 cut(s) 678, 1358, 1550
BstACI GRCGYC 3 cut(s) 294, 421, 2019
BstAPI GCANNNNNTGC 1 cut(s) 163
BstC8I GCNNGC 5 cut(s) 261, 383, 413, 1537, 1665
BstDEI CTNAG 8 cut(s) 839, 850, 885, 978, 1056, 1123, 1218, 2239
BstDSI CCRYGG 4 cut(s) 52, 1743, 1863, 2277
BstF5I GGATG 7 cut(s) 727, 1178, 1249, 1307, 1903, 2355, 2364
BstFNI CGCG 9 cut(s) 54, 59, 75, 305, 320, 408, 442, 444, 462
BstH2I RGCGCY 1 cut(s) 424
BstHHI GCGC 5 cut(s) 59, 408, 423, 444, 464
BstMAI GTCTC 5 cut(s) 35, 196, 747, 987, 2010
BstMCI CGRYCG 1 cut(s) 251
BstMWI GCNNNNNNNGC 7 cut(s) 163, 256, 391, 412, 2048, 2131, 2361
BstNI CCWGG 3 cut(s) 110, 501, 1314
BstNSI RCATGY 1 cut(s) 1358
BstSCI CCNGG 6 cut(s) 108, 328, 329, 464, 499, 1312
BstSFI CTRYAG 2 cut(s) 1638, 1647
BstUI CGCG 9 cut(s) 54, 59, 75, 305, 320, 408, 442, 444, 462
BstV1I GCAGC 4 cut(s) 402, 694, 2377, 2380
BstV2I GAAGAC 2 cut(s) 1134, 1812
BstX2I RGATCY 1 cut(s) 1594
BstYI RGATCY 1 cut(s) 1594
BstZI CGGCCG 1 cut(s) 248
Bsu36I CCTNAGG 2 cut(s) 839, 885
BsuI GTATCC 2 cut(s) 546, 1847
BsuRI GGCC 6 cut(s) 250, 328, 1195, 1632, 2276, 2300
BtgI CCRYGG 4 cut(s) 52, 1743, 1863, 2277
BtsCI GGATG 7 cut(s) 727, 1178, 1249, 1307, 1903, 2355, 2364
BtsI GCAGTG 2 cut(s) 1375, 1546
BtsIMutI CAGTG 4 cut(s) 1375, 1546, 2199, 2353
BtuMI TCGCGA 1 cut(s) 75
Cac8I GCNNGC 5 cut(s) 261, 383, 413, 1537, 1665
CaiI CAGNNNCTG 1 cut(s) 1610
CciI TCATGA 2 cut(s) 625, 1699
CfoI GCGC 5 cut(s) 59, 408, 423, 444, 464
Cfr10I RCCGGY 1 cut(s) 556
Cfr13I GGNCC 6 cut(s) 112, 327, 572, 1193, 1811, 2274
Cfr42I CCGCGG 1 cut(s) 55
Cfr9I CCCGGG 1 cut(s) 329
CseI GACGC 3 cut(s) 311, 326, 2078
Csp6I GTAC 2 cut(s) 361, 1329
CviQI GTAC 2 cut(s) 361, 1329
DdeI CTNAG 8 cut(s) 839, 850, 885, 978, 1056, 1123, 1218, 2239
DinI GGCGCC 1 cut(s) 422
DraIII CACNNNGTG 1 cut(s) 2175
DrdI GACNNNNNNGTC 1 cut(s) 2117
DseDI GACNNNNNNGTC 1 cut(s) 2117
EaeI YGGCCR 3 cut(s) 248, 1630, 2298
EagI CGGCCG 1 cut(s) 248
Eam1104I CTCTTC 3 cut(s) 678, 1358, 1550
EarI CTCTTC 3 cut(s) 678, 1358, 1550
EclXI CGGCCG 1 cut(s) 248
Eco130I CCWWGG 2 cut(s) 1863, 2277
Eco24I GRGCYC 2 cut(s) 11, 383
Eco47I GGWCC 3 cut(s) 112, 572, 1811
Eco52I CGGCCG 1 cut(s) 248
Eco57I CTGAAG 2 cut(s) 1422, 1574
Eco81I CCTNAGG 2 cut(s) 839, 885
Eco88I CYCGRG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 1193
EcoRI GAATTC 3 cut(s) 821, 1677, 1729
EcoRII CCWGG 3 cut(s) 108, 499, 1312
EcoT14I CCWWGG 2 cut(s) 1863, 2277
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 2 cut(s) 11, 383
EgeI GGCGCC 1 cut(s) 422
EheI GGCGCC 1 cut(s) 422
ErhI CCWWGG 2 cut(s) 1863, 2277
Esp3I CGTCTC 2 cut(s) 196, 2010
FaqI GGGAC 2 cut(s) 115, 368
FauI CCCGC 1 cut(s) 390
FauNDI CATATG 1 cut(s) 1387
FbaI TGATCA 2 cut(s) 1696, 1702
FblI GTMKAC 1 cut(s) 2179
FokI GGATG 7 cut(s) 734, 1165, 1256, 1294, 1890, 2342, 2351
FriOI GRGCYC 2 cut(s) 11, 383
FspBI CTAG 5 cut(s) 731, 1338, 2013, 2108, 2387
GlaI GCGC 5 cut(s) 58, 407, 422, 443, 463
GsuI CTGGAG 4 cut(s) 416, 1632, 1800, 2147
HaeII RGCGCY 1 cut(s) 424
HaeIII GGCC 6 cut(s) 250, 328, 1195, 1632, 2276, 2300
HapII CCGG 5 cut(s) 247, 330, 386, 465, 557
HgaI GACGC 3 cut(s) 311, 326, 2078
HhaI GCGC 5 cut(s) 59, 408, 423, 444, 464
Hin1I GRCGYC 3 cut(s) 294, 421, 2019
Hin6I GCGC 5 cut(s) 57, 406, 421, 442, 462
HinP1I GCGC 5 cut(s) 57, 406, 421, 442, 462
HincII GTYRAC 2 cut(s) 301, 999
HindII GTYRAC 2 cut(s) 301, 999
HpaII CCGG 5 cut(s) 247, 330, 386, 465, 557
HphI GGTGA 6 cut(s) 349, 1011, 1259, 1633, 1802, 2018
Hpy166II GTNNAC 8 cut(s) 289, 301, 363, 456, 520, 999, 1280, 2180
Hpy8I GTNNAC 8 cut(s) 289, 301, 363, 456, 520, 999, 1280, 2180
Hpy99I CGWCG 8 cut(s) 80, 200, 203, 256, 296, 299, 1287, 2094
HpyAV CCTTC 6 cut(s) 7, 463, 1107, 1266, 1718, 2345
HpyCH4III ACNGT 4 cut(s) 367, 1744, 1811, 2047
HpyCH4IV ACGT 3 cut(s) 294, 535, 2019
HpyCH4V TGCA 8 cut(s) 89, 725, 1076, 1354, 1685, 2051, 2062, 2326
HpyF10VI GCNNNNNNNGC 7 cut(s) 163, 256, 391, 412, 2048, 2131, 2361
HpyF3I CTNAG 8 cut(s) 839, 850, 885, 978, 1056, 1123, 1218, 2239
HpySE526I ACGT 3 cut(s) 294, 535, 2019
Hsp92I GRCGYC 3 cut(s) 294, 421, 2019
HspAI GCGC 5 cut(s) 57, 406, 421, 442, 462
KasI GGCGCC 1 cut(s) 420
Ksp22I TGATCA 2 cut(s) 1696, 1702
KspI CCGCGG 1 cut(s) 55
LguI GCTCTTC 1 cut(s) 1358
LmnI GCTCC 7 cut(s) 249, 397, 1500, 1532, 1798, 2131, 2401
Lsp1109I GCAGC 4 cut(s) 402, 694, 2377, 2380
LweI GCATC 5 cut(s) 471, 712, 2068, 2364, 2373
MaeI CTAG 5 cut(s) 731, 1338, 2013, 2108, 2387
MaeII ACGT 3 cut(s) 294, 535, 2019
MaeIII GTNAC 2 cut(s) 790, 1252
MflI RGATCY 1 cut(s) 1594
MhlI GDGCHC 2 cut(s) 11, 383
MluI ACGCGT 2 cut(s) 303, 318
Mly113I GGCGCC 1 cut(s) 421
MlyI GAGTC 3 cut(s) 451, 1124, 1791
MmeI TCCRAC 7 cut(s) 219, 261, 730, 1115, 1206, 1622, 2392
Mph1103I ATGCAT 1 cut(s) 727
MslI CAYNNNNRTG 2 cut(s) 630, 2282
MspA1I CMGCKG 2 cut(s) 54, 217
MspI CCGG 5 cut(s) 247, 330, 386, 465, 557
MspR9I CCNGG 6 cut(s) 110, 330, 331, 466, 501, 1314
MvaI CCWGG 3 cut(s) 110, 501, 1314
MvnI CGCG 9 cut(s) 54, 59, 75, 305, 320, 408, 442, 444, 462
MwoI GCNNNNNNNGC 7 cut(s) 163, 256, 391, 412, 2048, 2131, 2361
NarI GGCGCC 1 cut(s) 421
NciI CCSGG 3 cut(s) 330, 331, 466
NcoI CCATGG 2 cut(s) 1863, 2277
NdeI CATATG 1 cut(s) 1387
NlaIV GGNNCC 4 cut(s) 114, 422, 845, 1692
NmeAIII GCCGAG 1 cut(s) 1658
NmuCI GTSAC 1 cut(s) 790
NruI TCGCGA 1 cut(s) 75
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 1 cut(s) 1358
PacI TTAATTAA 1 cut(s) 1419
PagI TCATGA 2 cut(s) 625, 1699
PasI CCCWGGG 1 cut(s) 500
PciSI GCTCTTC 1 cut(s) 1358
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 195
PfeI GAWTC 8 cut(s) 148, 437, 664, 801, 1430, 1616, 1859, 2306
PflMI CCANNNNNTGG 1 cut(s) 1313
PfoI TCCNGGA 1 cut(s) 108
PleI GAGTC 3 cut(s) 451, 1124, 1790
PluTI GGCGCC 1 cut(s) 424
PpsI GAGTC 3 cut(s) 451, 1124, 1790
PsiI TTATAA 1 cut(s) 606
Psp6I CCWGG 3 cut(s) 108, 499, 1312
PspGI CCWGG 3 cut(s) 108, 499, 1312
PspN4I GGNNCC 4 cut(s) 114, 422, 845, 1692
PspPI GGNCC 6 cut(s) 112, 327, 572, 1193, 1811, 2274
PstNI CAGNNNCTG 1 cut(s) 1610
PsuI RGATCY 1 cut(s) 1594
RruI TCGCGA 1 cut(s) 75
RsaI GTAC 2 cut(s) 362, 1330
RsaNI GTAC 2 cut(s) 361, 1329
RseI CAYNNNNRTG 2 cut(s) 630, 2282
SacII CCGCGG 1 cut(s) 55
SapI GCTCTTC 1 cut(s) 1358
Sau96I GGNCC 6 cut(s) 112, 327, 572, 1193, 1811, 2274
SchI GAGTC 3 cut(s) 451, 1124, 1791
ScrFI CCNGG 6 cut(s) 110, 330, 331, 466, 501, 1314
SduI GDGCHC 2 cut(s) 11, 383
SfaNI GCATC 5 cut(s) 471, 712, 2068, 2364, 2373
SfcI CTRYAG 2 cut(s) 1638, 1647
SfoI GGCGCC 1 cut(s) 422
Sfr303I CCGCGG 1 cut(s) 55
SgrBI CCGCGG 1 cut(s) 55
SinI GGWCC 3 cut(s) 112, 572, 1811
SmaI CCCGGG 1 cut(s) 331
SmiMI CAYNNNNRTG 2 cut(s) 630, 2282
SspDI GGCGCC 1 cut(s) 420
SspMI CTAG 5 cut(s) 731, 1338, 2013, 2108, 2387
StyD4I CCNGG 6 cut(s) 108, 328, 329, 464, 499, 1312
StyI CCWWGG 2 cut(s) 1863, 2277
TaaI ACNGT 4 cut(s) 367, 1744, 1811, 2047
TaiI ACGT 3 cut(s) 297, 538, 2022
TaqI TCGA 3 cut(s) 66, 231, 667
TatI WGTACW 1 cut(s) 360
TauI GCSGC 9 cut(s) 54, 57, 217, 259, 411, 421, 447, 450, 1897
TfiI GAWTC 8 cut(s) 148, 437, 664, 801, 1430, 1616, 1859, 2306
TscAI CASTG 4 cut(s) 1375, 1546, 2206, 2353
TseFI GTSAC 1 cut(s) 790
TseI GCWGC 4 cut(s) 415, 682, 2390, 2393
Tsp45I GTSAC 1 cut(s) 790
TspGWI ACGGA 5 cut(s) 236, 590, 1041, 1437, 2014
TspMI CCCGGG 1 cut(s) 329
TspRI CASTG 4 cut(s) 1375, 1546, 2206, 2353
Van91I CCANNNNNTGG 1 cut(s) 1313
VpaK11BI GGWCC 3 cut(s) 112, 572, 1811
XapI RAATTY 5 cut(s) 821, 898, 1677, 1729, 1816
XceI RCATGY 1 cut(s) 1358
XmaI CCCGGG 1 cut(s) 329
XmiI GTMKAC 1 cut(s) 2179
XspI CTAG 5 cut(s) 731, 1338, 2013, 2108, 2387
ZraI GACGTC 2 cut(s) 295, 2020
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.