Prupe.3G124100_v2.0.a1

Protein of unknown function (DUF724)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000527
Physical Location & Seq
Reverse (-)
11208551 .. 11212279
3729 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G124100.1

Sequence Viewer

Length: 564 bp
ATGGGCTCGACCCCGGAAGAAGGTTATGAAGATGCAATGGTCGAAGCAGAAATTGAAGATTCTGCAATGGATATTGAGACGATAATAGAGGGCTCAAGTTCTGAAGAAATGACGAGAGAGACAGAAACTGTGGATTCTGCAATGGATTACTTGACAAAAGAAGTTCAGGTGGCTGTGACTGGAATATCTGCAACGGCATCCGCCCATGATCAACCTTTATCACTGTGCATAGATGAAATGCATTCTGTAAAAGCCATAGAGTGCTCAAGTAACCCTGCTGGGACTGCCAAGCAACAAAATGAGGATGGAGGAACACAAGTTGGGCAACCACATTTGCCTTTTGTGAGAAATTTTCCATTATGGGAAAATATTGAATCCATGGATGTATTCAAAAGATTTCCGCAAAAGCCACATTTTCATCCACTATTGAAGTGTAAAGAGGTCTGTCGTGAAGGATCAGCCCTTGGAAAGATGGTAAACTTTGCCTTTATGGTGGAGAAGACTTCCAAGTTGCAAGTTTTGGCAATCCTAGAGACTTATTTGATAGCATTTTGGAGGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF724

Protein Analysis

188

Amino Acids

20.82

Weight (kDa)

4.66

Isoelectric Point (pI)

54.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 201, 401
AclWI GGATC 1 cut(s) 463
AcsI RAATTY 1 cut(s) 349
AcuI CTGAAG 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 4 cut(s) 56, 374, 391, 430
Alw21I GWGCWC 1 cut(s) 266
Alw26I GTCTC 3 cut(s) 71, 113, 527
AlwI GGATC 1 cut(s) 463
AlwNI CAGNNNCTG 1 cut(s) 128
ApoI RAATTY 1 cut(s) 349
AsuC2I CCSGG 1 cut(s) 14
BanII GRGCYC 2 cut(s) 8, 95
BbsI GAAGAC 1 cut(s) 506
Bbv12I GWGCWC 1 cut(s) 266
BccI CCATC 2 cut(s) 299, 466
BceAI ACGGC 1 cut(s) 210
BclI TGATCA 1 cut(s) 208
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 3 cut(s) 71, 113, 527
BfaI CTAG 2 cut(s) 530, 562
Bme1390I CCNGG 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 2 cut(s) 22, 206
BpiI GAAGAC 1 cut(s) 506
BpuEI CTTGAG 2 cut(s) 79, 250
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 3 cut(s) 12, 378, 463
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 3 cut(s) 42, 72, 147
BseDI CCNNGG 3 cut(s) 12, 378, 463
BseGI GGATG 4 cut(s) 197, 310, 388, 418
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMI GCAATG 3 cut(s) 42, 72, 147
BseNI ACTGG 1 cut(s) 184
BseYI CCCAGC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 266
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 3 cut(s) 71, 113, 527
BsmBI CGTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 295
BsmI GAATGC 1 cut(s) 241
Bsp1286I GDGCHC 3 cut(s) 8, 95, 266
Bsp143I GATC 2 cut(s) 208, 455
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 2 cut(s) 201, 401
BspPI GGATC 1 cut(s) 463
BsrDI GCAATG 3 cut(s) 42, 72, 147
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 3 cut(s) 12, 378, 463
BssMI GATC 2 cut(s) 208, 455
BssT1I CCWWGG 2 cut(s) 378, 463
Bst4CI ACNGT 2 cut(s) 130, 225
BstDSI CCRYGG 1 cut(s) 378
BstF5I GGATG 4 cut(s) 197, 310, 388, 418
BstKTI GATC 2 cut(s) 211, 458
BstMAI GTCTC 3 cut(s) 71, 113, 527
BstMBI GATC 2 cut(s) 208, 455
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 12
BstV2I GAAGAC 1 cut(s) 506
BtgI CCRYGG 1 cut(s) 378
BtsCI GGATG 4 cut(s) 197, 310, 388, 418
BtsIMutI CAGTG 1 cut(s) 221
CaiI CAGNNNCTG 1 cut(s) 128
CviAII CATG 2 cut(s) 206, 379
CviJI RGCY 6 cut(s) 6, 93, 173, 254, 409, 461
CviKI_1 RGCY 6 cut(s) 6, 93, 173, 254, 409, 461
DpnI GATC 2 cut(s) 210, 457
DpnII GATC 2 cut(s) 208, 455
EciI GGCGGA 1 cut(s) 190
Eco130I CCWWGG 2 cut(s) 378, 463
Eco24I GRGCYC 2 cut(s) 8, 95
Eco57I CTGAAG 1 cut(s) 123
EcoT14I CCWWGG 2 cut(s) 378, 463
EcoT22I ATGCAT 1 cut(s) 243
EcoT38I GRGCYC 2 cut(s) 8, 95
ErhI CCWWGG 2 cut(s) 378, 463
Esp3I CGTCTC 1 cut(s) 71
FaeI CATG 2 cut(s) 209, 382
FaiI YATR 7 cut(s) 27, 207, 230, 257, 361, 380, 491
FaqI GGGAC 1 cut(s) 295
FatI CATG 2 cut(s) 205, 378
FbaI TGATCA 1 cut(s) 208
FokI GGATG 4 cut(s) 184, 317, 395, 405
FriOI GRGCYC 2 cut(s) 8, 95
FspBI CTAG 2 cut(s) 530, 562
GsaI CCCAGC 1 cut(s) 282
HapII CCGG 1 cut(s) 14
Hin1II CATG 2 cut(s) 209, 382
HinfI GANTC 3 cut(s) 59, 134, 374
HpaII CCGG 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 449
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 2 cut(s) 14, 446
HpyCH4III ACNGT 2 cut(s) 130, 225
HpyCH4V TGCA 7 cut(s) 35, 65, 140, 191, 228, 241, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
Hsp92II CATG 2 cut(s) 209, 382
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 208, 455
LpnPI CCDG 5 cut(s) 27, 152, 165, 264, 288
LweI GCATC 2 cut(s) 22, 206
MaeI CTAG 2 cut(s) 530, 562
MaeIII GTNAC 2 cut(s) 175, 269
MalI GATC 2 cut(s) 210, 457
MboI GATC 2 cut(s) 208, 455
MboII GAAGA 5 cut(s) 29, 41, 68, 116, 511
MhlI GDGCHC 3 cut(s) 8, 95, 266
MluCI AATT 2 cut(s) 51, 349
MnlI CCTC 5 cut(s) 82, 295, 302, 433, 549
Mph1103I ATGCAT 1 cut(s) 243
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 14
Mva1269I GAATGC 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 284
NciI CCSGG 1 cut(s) 14
NcoI CCATGG 1 cut(s) 378
NdeII GATC 2 cut(s) 208, 455
NlaIII CATG 2 cut(s) 209, 382
NmuCI GTSAC 1 cut(s) 175
NsiI ATGCAT 1 cut(s) 243
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 3 cut(s) 59, 134, 374
PspFI CCCAGC 1 cut(s) 278
PstNI CAGNNNCTG 1 cut(s) 128
Sau3AI GATC 2 cut(s) 208, 455
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 3 cut(s) 8, 95, 266
SetI ASST 4 cut(s) 25, 171, 217, 444
SfaNI GCATC 2 cut(s) 22, 206
SmlI CTYRAG 2 cut(s) 94, 265
SmoI CTYRAG 2 cut(s) 94, 265
Sse9I AATT 2 cut(s) 51, 349
SsiI CCGC 2 cut(s) 201, 401
SspI AATATT 1 cut(s) 370
SspMI CTAG 2 cut(s) 530, 562
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 2 cut(s) 378, 463
TaaI ACNGT 2 cut(s) 130, 225
TaqI TCGA 2 cut(s) 8, 42
TasI AATT 2 cut(s) 51, 349
TfiI GAWTC 3 cut(s) 59, 134, 374
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 3 cut(s) 42, 249, 407
TspRI CASTG 1 cut(s) 228
XapI RAATTY 1 cut(s) 349
XspI CTAG 2 cut(s) 530, 562
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.