Rroxscaffold_5G00355260

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000527
Physical Location & Seq
Forward (+)
33905846 .. 33907227
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00355260.1

Sequence Viewer

Length: 183 bp
ATGAGTGTTGTGGGGGAGAAGTACACGGTGGGGTTTAAGAGCCCACCGGATTTGCTGGAGATTGGGCTCGGGGAGCTGCAGAGGCATTGGGATTGGTGCAGCAACAAGTGGAGTACGGCGAGAAAGAGAAATAATAGTCACAGGCATCTCGTACCATCCCCCCCCCCCCAACAAAATGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

60

Amino Acids

6.88

Weight (kDa)

9.51

Isoelectric Point (pI)

69.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 23, 115, 153
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 76, 99
AvaI CYCGRG 1 cut(s) 68
BanII GRGCYC 2 cut(s) 44, 69
BbvI GCAGC 2 cut(s) 63, 111
BccI CCATC 1 cut(s) 163
BceAI ACGGC 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 77
BisI GCNGC 2 cut(s) 77, 100
BlsI GCNGC 2 cut(s) 78, 101
BmeT110I CYCGRG 1 cut(s) 68
BmsI GCATC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 46
BseGI GGATG 1 cut(s) 155
BseXI GCAGC 2 cut(s) 63, 111
BsgI GTGCAG 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 68
BsiSI CCGG 1 cut(s) 47
BsoBI CYCGRG 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 44, 69
BspMAI CTGCAG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 28
BstF5I GGATG 1 cut(s) 155
BstMWI GCNNNNNNNGC 2 cut(s) 73, 82
BstSFI CTRYAG 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 63, 111
BtsCI GGATG 1 cut(s) 155
Csp6I GTAC 3 cut(s) 22, 114, 152
CspCI CAANNNNNGTGG 2 cut(s) 33, 68
CviJI RGCY 3 cut(s) 42, 67, 76
CviKI_1 RGCY 3 cut(s) 42, 67, 76
CviQI GTAC 3 cut(s) 22, 114, 152
Eco24I GRGCYC 2 cut(s) 44, 69
Eco88I CYCGRG 1 cut(s) 68
EcoT38I GRGCYC 2 cut(s) 44, 69
Fnu4HI GCNGC 2 cut(s) 77, 100
FokI GGATG 1 cut(s) 142
FriOI GRGCYC 2 cut(s) 44, 69
Fsp4HI GCNGC 2 cut(s) 77, 100
GluI GCNGC 2 cut(s) 77, 100
GsuI CTGGAG 1 cut(s) 77
HapII CCGG 1 cut(s) 47
HpaII CCGG 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 24
Hpy8I GTNNAC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 2 cut(s) 79, 99
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 82
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 3 cut(s) 41, 60, 127
Lsp1109I GCAGC 2 cut(s) 63, 111
LweI GCATC 1 cut(s) 154
MaeIII GTNAC 1 cut(s) 137
MhlI GDGCHC 2 cut(s) 44, 69
MnlI CCTC 1 cut(s) 75
MseI TTAA 1 cut(s) 36
MspI CCGG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 73, 82
NmuCI GTSAC 1 cut(s) 137
PkrI GCNGC 2 cut(s) 78, 101
PstI CTGCAG 1 cut(s) 81
RsaI GTAC 3 cut(s) 23, 115, 153
RsaNI GTAC 3 cut(s) 22, 114, 152
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 77, 100
SduI GDGCHC 2 cut(s) 44, 69
SetI ASST 1 cut(s) 78
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 77
SgeI CNNG 9 cut(s) 37, 59, 68, 80, 82, 118, 132, 154, 161
TaaI ACNGT 1 cut(s) 28
TatI WGTACW 1 cut(s) 21
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 2 cut(s) 76, 99
Tsp45I GTSAC 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.