Rh1BG348400

agenet domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000527
Physical Location & Seq
Reverse (-)
48128492 .. 48139665
11174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG348400.1

Sequence Viewer

Length: 2838 bp
ATGGCGAAACCGAGCAGCAATACTCGGACTTGGTTCTGGAGCCGAGGCGCGAAAGTGGAGGTGCGCACGGAAGAAGAAGGCTTCCACGGCGCGTGGTTCCCGGCGACGATCCTGGAGCCGCCGTCGAATCCTTCTTCGGTTCTCGGCAGGAAACGAAAGAGCTTCAACTCGAACAAGGTCTTGGTCCAGTACAACACCTTCGTCACGGAGAAGGACCCAACCAAGCCGCTGACGGAGTACACCAAAGTCATGTTCCTCCGGCCGTCGCCGCCGGTGGAGGCTCCCGGGAAGACATTCGAGGCCGGCGACGACGTGGACGCGTTTCACAACGACGCGTGGTGGCCGGGAGTGGTGATGAGTGTGGAAGGAGGGGACAGGTACAGGGTGGGGTTTAGGGACCCGCCGGAGTTGCTGGTGCTTCGCCGGAGTGAGTTGAGGAGTCACTTGGATTGGGTCAACGAGATTTGGTCCAGACCATACAAGAAGCGGATGAAGGAATCGATGTATAGTCCGGGGACTCCAATTGAAGCGAGACTTGTCAAAGAACATCTATGGTCTGCTTGGATTCCAGCAATTTATGCTGGTGCATTAGGGGGGAACTTGTTTTTGGTTCAATATAAGAGCCTAAAGAACAGTGATAAAGATGGGATCGCTACAGTGGCTGTATCTGACCATCAGATCCGACCTCGCCCTCCACGGCACAACGAAACAGGTTTTTGCTTGCTGGACATGGTGGATGCGTTCCATGATATGAGTTGGTGGGTTGGAAGTATTACAAATGTTCTTCCAGACAAAAAGTACATTGTCACTTTTAAACTTACAGATGAACAGAAAGAATTCAGTCACTCAGAACTAAGGCTCCATATGGAATGGATTGACAAAAAATGGGAGTCTGACTTTTCGAGATTTGGGTCTGCGATGGATGATATAGAACAAACACAGCATACATTCACAAATTCCAGAAACTCTGCGGTAGCTACACCACTTAAAAGTTCATGTGCTACCAAGGATAGCACGGGAGAAGAAAATCCTTATGCTAGCTCACAGAAGAATCAGATGAAGCAGCTGGGTCCTTGCATTGATAAATCAGCTTATAGGAAAACCACAAATGAACTGAAACTACTGGACCAACCTAATGATGATGGAACATTTTTAAGTCCAACTCCTTCCAAGAAGTTAAAACGACATCCAGAAGAATCTGTTTCTGTTGATGAAGTATATGTGAGGAGAACACCAGTTAAAATATCCAATAAAAAAGGCCCTGTTGGAGATGGTGTGAAGACTGGGTCGCTGCTTGGAGAACAGGGTAGACAAAGAAAATCACAATTTGATGGGAGCAGTCCACCACTGAAAATTCATGTTGCAGTCAAGAAGGGAAGTAGAATGGACAAGGCTGATGAAGAATGTATTGGCGATGAGCATGTAATGGACAAGTCTGAATCTTCTGGTATTCAGTCAGACTCTGAAGTAACGAGAAGATCACTTGCTGGAAATTCTAGTCTCATGCATTTGAAGGAGATTAATCAACACGATGAAGATGGAGTGAGCAATCAGACAAAAGTGAAGGATTCTGAAGATTCAACAAGAAATGGGGCAACAGAAGCATCTGGAATGGAAGTTCAGGTGACTGTGCCTGGATTGTCTGCAAAGCCTGCTGCTCATGATCAGCCAGTATCATTGTGTACAGATGAAATGCCTTCTGAATACACCATTGAGTGCTTAGTTAATCCGGTTGATGAAATGCATTCTCAATGCACTCTTAATCAGGATGACAAAATGTTTCATGAAGGCACTATGGAGTGTGCAGGTAACCCTGCTGCAACTACCAACCAACAAATTCCAGTTGCTGAGGCTGGACTACCTGGAAAGACACCTACTCATGATCAGCCTCTACCATTGTGCATATACAAGATGCATTCTGAAAAGACTATGGACGGCTCAAGTTCTGAAGATCCAACAGAAGATGGAAAAGCTCAAGCTACTGCAATGGAAGTAGAGGTGGCTGGGACTGAAATATCCTCAGAGACACCTCTTCATGATCAACCTTTATTATTGTGTAACCCCGCTGGGACTGCAAAAACATCCCTTCATGATCAATTTCAGGCATCAAGCATAGCTGAAATGTATTCTGAACATACTACTGAGGGCTCATGCAAACGTGCTGGGACAGCAAAGCAACAATATGAGGTTACAGGGAGACAAGGTGAAACTGGAATTACCAGTGACATTGAGCAAGAAGACACTCCACATCTGCCTTTTGTGAAAAAATCTCCATTTTGGAAAATGCTGGAATCCATGGATGCATTCAAAATGTTTCCACAACAGCCACATTTTAAGCCCTTACTGAAGGTTAAAATGTTATGCCGTGAAGGACTAGCCCTTGGAGGTATGCATATCTTTGCTGCTGTGGTCGAGTACACTTCGAAGCTGCAGGTTGATGATCCTAGTGACTCCATCAACGACATTTTGGAAGCTCTAGTTGAACTGGAACGGCTGGGATTTGATGTCAAGGCACTCCAGGACCGACTGAATGAATTGCAAGACATGAAACTTAGGTTTGCAGAGCTTAAGAACAAGTCAGACGGAGTCAAAATCCTGATCACAAATTGTACGCATGAAAGAAGCAAAGGCTCTGAAGTTATCAGTGGGATGGATGCGGAGATCAATGACTTGGAGGAAAAGATCAGAGGGATACAGGCAAAAAGGGCAAAGGCGGTTTCAGAGAGGGCGGCGAAAGATTCTGAAATCAGTATGTTGGAATCAGAAGCAAATGCTATCAATGAAGGCATTCAGAGCATCGAGCATGATTTCCAAAATCTAGCAGCAGCTGCATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

945

Amino Acids

105.24

Weight (kDa)

5.49

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 16 - 91 1.3e-13 Agenet domain
Agenet PF05641 172 - 232 1.4e-06 Agenet domain
DUF724 PF05266 751 - 943 2.7e-52 Protein of unknown function (DUF724)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 65
Acc36I ACCTGC 2 cut(s) 1796, 2422
AccI GTMKAC 1 cut(s) 1309
AccII CGCG 4 cut(s) 50, 92, 320, 335
AclWI GGATC 5 cut(s) 103, 656, 673, 1946, 2435
AcoI YGGCCR 2 cut(s) 260, 341
AcsI RAATTY 5 cut(s) 836, 955, 1353, 1492, 1836
AcuI CTGAAG 5 cut(s) 1485, 1593, 1968, 2366, 2655
AfaI GTAC 7 cut(s) 191, 239, 380, 800, 1684, 2417, 2611
AflII CTTAAG 1 cut(s) 2567
AflIII ACRYGT 2 cut(s) 318, 333
AgsI TTSAA 7 cut(s) 166, 527, 614, 1513, 1581, 2308, 2483
AjiI CACGTC 1 cut(s) 313
AjnI CCWGG 4 cut(s) 111, 1633, 1861, 2517
AjuI GAANNNNNNNTTGG 8 cut(s) 164, 196, 236, 268, 590, 622, 1392, 1424
AloI GAACNNNNNNTCC 4 cut(s) 843, 875, 1602, 1634
Alw26I GTCTC 4 cut(s) 526, 1505, 2018, 2191
AlwI GGATC 5 cut(s) 103, 656, 673, 1946, 2435
AlwNI CAGNNNCTG 4 cut(s) 662, 1463, 1847, 2828
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 4 cut(s) 260, 300, 341, 1258
ApoI RAATTY 5 cut(s) 836, 955, 1353, 1492, 1836
AseI ATTAAT 1 cut(s) 1521
Asp700I GAANNNNTTC 3 cut(s) 293, 836, 2787
AspLEI GCGC 3 cut(s) 50, 66, 92
AspS9I GGNCC 8 cut(s) 184, 214, 397, 468, 1070, 1126, 1259, 2521
AsuC2I CCSGG 5 cut(s) 101, 285, 286, 345, 513
AsuHPI GGTGA 3 cut(s) 364, 1636, 2216
AsuII TTCGAA 1 cut(s) 2423
AsuNHI GCTAGC 1 cut(s) 1037
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 7 cut(s) 184, 214, 397, 468, 1070, 1126, 2521
BanII GRGCYC 1 cut(s) 2150
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BbsI GAAGAC 3 cut(s) 296, 1286, 2244
BbvCI CCTCAGC 1 cut(s) 1848
BbvI GCAGC 9 cut(s) 27, 1075, 1278, 1642, 1804, 2389, 2415, 2815, 2834
BceAI ACGGC 7 cut(s) 103, 106, 247, 713, 1951, 2349, 2507
BciT130I CCWGG 4 cut(s) 113, 1635, 1863, 2519
BciVI GTATCC 1 cut(s) 2685
BclI TGATCA 5 cut(s) 1663, 1882, 2038, 2092, 2598
BcnI CCSGG 5 cut(s) 101, 285, 286, 345, 513
BcoDI GTCTC 4 cut(s) 526, 1505, 2018, 2191
BfaI CTAG 6 cut(s) 1038, 1497, 2375, 2445, 2477, 2819
BfmI CTRYAG 2 cut(s) 654, 2429
BfrI CTTAAG 1 cut(s) 2567
BfuAI ACCTGC 2 cut(s) 1796, 2422
BfuI GTATCC 1 cut(s) 2685
Bme1390I CCNGG 9 cut(s) 101, 113, 285, 286, 345, 513, 1635, 1863, 2519
Bme18I GGWCC 7 cut(s) 184, 214, 397, 468, 1070, 1126, 2521
BmeT110I CYCGRG 1 cut(s) 284
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 8 cut(s) 184, 214, 397, 468, 1070, 1126, 1259, 2521
BmiI GGNNCC 9 cut(s) 41, 98, 117, 216, 282, 398, 399, 860, 1071
BmrFI CCNGG 9 cut(s) 101, 113, 285, 286, 345, 513, 1635, 1863, 2519
BmrI ACTGGG 1 cut(s) 1293
BmsI GCATC 7 cut(s) 727, 1613, 1902, 2114, 2290, 2644, 2805
BmtI GCTAGC 1 cut(s) 1041
BmuI ACTGGG 1 cut(s) 1293
BpiI GAAGAC 3 cut(s) 296, 1286, 2244
BpmI CTGGAG 3 cut(s) 58, 134, 2501
Bpu10I CCTNAGC 1 cut(s) 1848
Bpu14I TTCGAA 1 cut(s) 2423
BpuEI CTTGAG 2 cut(s) 1924, 1959
BpuMI CCSGG 5 cut(s) 101, 285, 286, 345, 513
Bsa29I ATCGAT 1 cut(s) 500
BsaJI CCNNGG 8 cut(s) 43, 85, 284, 512, 695, 1005, 2295, 2380
BsaWI WCCGGW 1 cut(s) 1729
BsaXI ACNNNNNCTCC 8 cut(s) 107, 137, 843, 873, 1260, 1290, 2188, 2218
Bse118I RCCGGY 2 cut(s) 271, 302
Bse1I ACTGG 9 cut(s) 187, 1128, 1235, 1288, 1670, 1841, 2215, 2220, 2490
Bse3DI GCAATG 1 cut(s) 1992
BseBI CCWGG 4 cut(s) 113, 1635, 1863, 2519
BseCI ATCGAT 1 cut(s) 500
BseDI CCNNGG 8 cut(s) 43, 85, 284, 512, 695, 1005, 2295, 2380
BseGI GGATG 9 cut(s) 495, 742, 928, 1186, 1774, 2081, 2305, 2655, 2659
BseMI GCAATG 1 cut(s) 1992
BseMII CTCAG 4 cut(s) 861, 1839, 2034, 2133
BseNI ACTGG 9 cut(s) 187, 1128, 1235, 1288, 1670, 1841, 2215, 2220, 2490
BseRI GAGGAG 2 cut(s) 451, 1240
BseX3I CGGCCG 1 cut(s) 260
BseXI GCAGC 9 cut(s) 27, 1075, 1278, 1642, 1804, 2389, 2415, 2815, 2834
BseYI CCCAGC 5 cut(s) 1066, 2003, 2066, 2162, 2494
BsgI GTGCAG 1 cut(s) 1824
Bsh1236I CGCG 4 cut(s) 50, 92, 320, 335
Bsh1285I CGRYCG 1 cut(s) 263
BshFI GGCC 4 cut(s) 262, 302, 343, 1260
BshVI ATCGAT 1 cut(s) 500
BsiEI CGRYCG 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 284
BslFI GGGAC 6 cut(s) 386, 410, 529, 2020, 2083, 2179
BsmAI GTCTC 4 cut(s) 526, 1505, 2018, 2191
BsmFI GGGAC 6 cut(s) 386, 410, 529, 2020, 2083, 2179
BsmI GAATGC 4 cut(s) 1744, 1915, 2303, 2787
BsnI GGCC 4 cut(s) 262, 302, 343, 1260
BsoBI CYCGRG 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 2423
Bsp1286I GDGCHC 1 cut(s) 2150
Bsp1407I TGTACA 1 cut(s) 1682
Bsp19I CCATGG 1 cut(s) 2295
BspANI GGCC 4 cut(s) 262, 302, 343, 1260
BspCNI CTCAG 4 cut(s) 860, 1840, 2033, 2134
BspDI ATCGAT 1 cut(s) 500
BspFNI CGCG 4 cut(s) 50, 92, 320, 335
BspHI TCATGA 5 cut(s) 1660, 1783, 1879, 2035, 2089
BspLI GGNNCC 9 cut(s) 41, 98, 117, 216, 282, 398, 399, 860, 1071
BspMAI CTGCAG 1 cut(s) 2433
BspMI ACCTGC 2 cut(s) 1796, 2422
BspOI GCTAGC 1 cut(s) 1041
BspPI GGATC 5 cut(s) 103, 656, 673, 1946, 2435
BspT104I TTCGAA 1 cut(s) 2423
BspTI CTTAAG 1 cut(s) 2567
BsrDI GCAATG 1 cut(s) 1992
BsrFI RCCGGY 2 cut(s) 271, 302
BsrGI TGTACA 1 cut(s) 1682
BsrI ACTGG 9 cut(s) 187, 1128, 1235, 1288, 1670, 1841, 2215, 2220, 2490
BssAI RCCGGY 2 cut(s) 271, 302
BssECI CCNNGG 8 cut(s) 43, 85, 284, 512, 695, 1005, 2295, 2380
BssT1I CCWWGG 3 cut(s) 1005, 2295, 2380
Bst2UI CCWGG 4 cut(s) 113, 1635, 1863, 2519
Bst4CI ACNGT 3 cut(s) 635, 658, 1630
Bst6I CTCTTC 1 cut(s) 2037
BstAFI CTTAAG 1 cut(s) 2567
BstAPI GCANNNNNTGC 3 cut(s) 578, 1652, 2828
BstAUI TGTACA 1 cut(s) 1682
BstBI TTCGAA 1 cut(s) 2423
BstC8I GCNNGC 4 cut(s) 304, 722, 1039, 1653
BstDEI CTNAG 7 cut(s) 847, 854, 1720, 1848, 2020, 2142, 2552
BstDSI CCRYGG 3 cut(s) 85, 695, 2295
BstEII GGTNACC 1 cut(s) 1808
BstF5I GGATG 9 cut(s) 495, 742, 928, 1186, 1774, 2081, 2305, 2655, 2659
BstFNI CGCG 4 cut(s) 50, 92, 320, 335
BstHHI GCGC 3 cut(s) 50, 66, 92
BstMAI GTCTC 4 cut(s) 526, 1505, 2018, 2191
BstMCI CGRYCG 1 cut(s) 263
BstNI CCWGG 4 cut(s) 113, 1635, 1863, 2519
BstNSI RCATGY 1 cut(s) 1424
BstPI GGTNACC 1 cut(s) 1808
BstSCI CCNGG 9 cut(s) 99, 111, 283, 284, 343, 511, 1633, 1861, 2517
BstSFI CTRYAG 2 cut(s) 654, 2429
BstUI CGCG 4 cut(s) 50, 92, 320, 335
BstV1I GCAGC 9 cut(s) 27, 1075, 1278, 1642, 1804, 2389, 2415, 2815, 2834
BstV2I GAAGAC 3 cut(s) 296, 1286, 2244
BstX2I RGATCY 2 cut(s) 678, 1951
BstYI RGATCY 2 cut(s) 678, 1951
BstZI CGGCCG 1 cut(s) 260
Bsu15I ATCGAT 1 cut(s) 500
BsuI GTATCC 1 cut(s) 2685
BsuRI GGCC 4 cut(s) 262, 302, 343, 1260
BsuTUI ATCGAT 1 cut(s) 500
BtgI CCRYGG 3 cut(s) 85, 695, 2295
BtgZI GCGATG 2 cut(s) 932, 1428
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 9 cut(s) 495, 742, 928, 1186, 1774, 2081, 2305, 2655, 2659
BtsIMutI CAGTG 5 cut(s) 640, 663, 1346, 2227, 2650
BveI ACCTGC 2 cut(s) 1796, 2422
Cac8I GCNNGC 4 cut(s) 304, 722, 1039, 1653
CaiI CAGNNNCTG 4 cut(s) 662, 1463, 1847, 2828
CciI TCATGA 5 cut(s) 1660, 1783, 1879, 2035, 2089
CfoI GCGC 3 cut(s) 50, 66, 92
Cfr10I RCCGGY 2 cut(s) 271, 302
Cfr13I GGNCC 8 cut(s) 184, 214, 397, 468, 1070, 1126, 1259, 2521
Cfr9I CCCGGG 1 cut(s) 284
ClaI ATCGAT 1 cut(s) 500
CseI GACGC 2 cut(s) 326, 341
Csp6I GTAC 7 cut(s) 190, 238, 379, 799, 1683, 2416, 2610
CviQI GTAC 7 cut(s) 190, 238, 379, 799, 1683, 2416, 2610
DdeI CTNAG 7 cut(s) 847, 854, 1720, 1848, 2020, 2142, 2552
DraI TTTAAA 1 cut(s) 814
EaeI YGGCCR 2 cut(s) 260, 341
EagI CGGCCG 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 2037
EarI CTCTTC 1 cut(s) 2037
EclXI CGGCCG 1 cut(s) 260
Eco130I CCWWGG 3 cut(s) 1005, 2295, 2380
Eco24I GRGCYC 1 cut(s) 2150
Eco47I GGWCC 7 cut(s) 184, 214, 397, 468, 1070, 1126, 2521
Eco52I CGGCCG 1 cut(s) 260
Eco57I CTGAAG 5 cut(s) 1485, 1593, 1968, 2366, 2655
Eco88I CYCGRG 1 cut(s) 284
Eco91I GGTNACC 1 cut(s) 1808
EcoO109I RGGNCCY 4 cut(s) 214, 397, 1070, 1259
EcoO65I GGTNACC 1 cut(s) 1808
EcoRI GAATTC 1 cut(s) 836
EcoRII CCWGG 4 cut(s) 111, 1633, 1861, 2517
EcoT14I CCWWGG 3 cut(s) 1005, 2295, 2380
EcoT22I ATGCAT 5 cut(s) 1509, 1746, 1917, 2305, 2394
EcoT38I GRGCYC 1 cut(s) 2150
ErhI CCWWGG 3 cut(s) 1005, 2295, 2380
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FaqI GGGAC 6 cut(s) 386, 410, 529, 2020, 2083, 2179
FauI CCCGC 2 cut(s) 408, 2071
FauNDI CATATG 1 cut(s) 864
FbaI TGATCA 5 cut(s) 1663, 1882, 2038, 2092, 2598
FblI GTMKAC 1 cut(s) 1309
FokI GGATG 9 cut(s) 502, 749, 935, 1173, 1781, 2068, 2312, 2662, 2666
FriOI GRGCYC 1 cut(s) 2150
FspAI RTGCGCAY 1 cut(s) 65
FspBI CTAG 6 cut(s) 1038, 1497, 2375, 2445, 2477, 2819
FspI TGCGCA 1 cut(s) 65
GlaI GCGC 3 cut(s) 49, 65, 91
GsaI CCCAGC 5 cut(s) 1070, 2007, 2070, 2166, 2498
GsuI CTGGAG 3 cut(s) 58, 134, 2501
HaeIII GGCC 4 cut(s) 262, 302, 343, 1260
HgaI GACGC 2 cut(s) 326, 341
HhaI GCGC 3 cut(s) 50, 66, 92
Hin6I GCGC 3 cut(s) 48, 64, 90
HinP1I GCGC 3 cut(s) 48, 64, 90
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HphI GGTGA 3 cut(s) 364, 1636, 2216
Hpy166II GTNNAC 7 cut(s) 240, 316, 457, 1310, 1343, 1683, 2418
Hpy8I GTNNAC 7 cut(s) 240, 316, 457, 1310, 1343, 1683, 2418
Hpy99I CGWCG 6 cut(s) 109, 127, 268, 311, 314, 335
HpyCH4III ACNGT 3 cut(s) 635, 658, 1630
HpyCH4IV ACGT 2 cut(s) 312, 2158
HpyF3I CTNAG 7 cut(s) 847, 854, 1720, 1848, 2020, 2142, 2552
HpySE526I ACGT 2 cut(s) 312, 2158
HspAI GCGC 3 cut(s) 48, 64, 90
KflI GGGWCCC 1 cut(s) 397
KroI GCCGGC 1 cut(s) 302
KroNI GCCGGC 1 cut(s) 304
Ksp22I TGATCA 5 cut(s) 1663, 1882, 2038, 2092, 2598
LmnI GCTCC 5 cut(s) 39, 115, 286, 864, 1335
Lsp1109I GCAGC 9 cut(s) 27, 1075, 1278, 1642, 1804, 2389, 2415, 2815, 2834
LweI GCATC 7 cut(s) 727, 1613, 1902, 2114, 2290, 2644, 2805
MaeI CTAG 6 cut(s) 1038, 1497, 2375, 2445, 2477, 2819
MaeII ACGT 2 cut(s) 312, 2158
MfeI CAATTG 1 cut(s) 522
MflI RGATCY 2 cut(s) 678, 1951
MhlI GDGCHC 1 cut(s) 2150
MluI ACGCGT 2 cut(s) 318, 333
MlyI GAGTC 6 cut(s) 448, 511, 899, 1454, 2444, 2595
MmeI TCCRAC 6 cut(s) 706, 745, 1184, 1246, 1979, 2736
Mph1103I ATGCAT 5 cut(s) 1509, 1746, 1917, 2305, 2394
MroNI GCCGGC 1 cut(s) 302
MroXI GAANNNNTTC 3 cut(s) 293, 836, 2787
MspA1I CMGCKG 4 cut(s) 229, 1066, 2066, 2828
MspCI CTTAAG 1 cut(s) 2567
MspR9I CCNGG 9 cut(s) 101, 113, 285, 286, 345, 513, 1635, 1863, 2519
MunI CAATTG 1 cut(s) 522
Mva1269I GAATGC 4 cut(s) 1744, 1915, 2303, 2787
MvaI CCWGG 4 cut(s) 113, 1635, 1863, 2519
MvnI CGCG 4 cut(s) 50, 92, 320, 335
NaeI GCCGGC 1 cut(s) 304
NciI CCSGG 5 cut(s) 101, 285, 286, 345, 513
NcoI CCATGG 1 cut(s) 2295
NdeI CATATG 1 cut(s) 864
NgoMIV GCCGGC 1 cut(s) 302
NheI GCTAGC 1 cut(s) 1037
NlaIV GGNNCC 9 cut(s) 41, 98, 117, 216, 282, 398, 399, 860, 1071
NmeAIII GCCGAG 2 cut(s) 68, 123
NmuCI GTSAC 7 cut(s) 202, 440, 805, 842, 1624, 2222, 2447
NsbI TGCGCA 1 cut(s) 65
NsiI ATGCAT 5 cut(s) 1509, 1746, 1917, 2305, 2394
NspI RCATGY 1 cut(s) 1424
NspV TTCGAA 1 cut(s) 2423
PagI TCATGA 5 cut(s) 1660, 1783, 1879, 2035, 2089
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PctI GAATGC 4 cut(s) 1744, 1915, 2303, 2787
PdiI GCCGGC 1 cut(s) 304
PdmI GAANNNNTTC 3 cut(s) 293, 836, 2787
PflFI GACNNNGTC 2 cut(s) 1285, 2585
PfoI TCCNGGA 2 cut(s) 111, 2517
PleI GAGTC 6 cut(s) 447, 511, 898, 1454, 2444, 2594
PpsI GAGTC 6 cut(s) 447, 511, 898, 1454, 2444, 2594
PpuMI RGGWCCY 3 cut(s) 214, 397, 1070
PshBI ATTAAT 1 cut(s) 1521
Psp5II RGGWCCY 3 cut(s) 214, 397, 1070
Psp6I CCWGG 4 cut(s) 111, 1633, 1861, 2517
PspEI GGTNACC 1 cut(s) 1808
PspFI CCCAGC 5 cut(s) 1066, 2003, 2066, 2162, 2494
PspGI CCWGG 4 cut(s) 111, 1633, 1861, 2517
PspN4I GGNNCC 9 cut(s) 41, 98, 117, 216, 282, 398, 399, 860, 1071
PspPI GGNCC 8 cut(s) 184, 214, 397, 468, 1070, 1126, 1259, 2521
PspPPI RGGWCCY 3 cut(s) 214, 397, 1070
PsrI GAACNNNNNNTAC 2 cut(s) 1104, 1136
PstI CTGCAG 1 cut(s) 2433
PstNI CAGNNNCTG 4 cut(s) 662, 1463, 1847, 2828
PsuI RGATCY 2 cut(s) 678, 1951
PsyI GACNNNGTC 2 cut(s) 1285, 2585
PvuII CAGCTG 2 cut(s) 1066, 2828
RsaI GTAC 7 cut(s) 191, 239, 380, 800, 1684, 2417, 2611
RsaNI GTAC 7 cut(s) 190, 238, 379, 799, 1683, 2416, 2610
Sau96I GGNCC 8 cut(s) 184, 214, 397, 468, 1070, 1126, 1259, 2521
SchI GAGTC 6 cut(s) 448, 511, 899, 1454, 2444, 2595
ScrFI CCNGG 9 cut(s) 101, 113, 285, 286, 345, 513, 1635, 1863, 2519
SduI GDGCHC 1 cut(s) 2150
SfaNI GCATC 7 cut(s) 727, 1613, 1902, 2114, 2290, 2644, 2805
SfcI CTRYAG 2 cut(s) 654, 2429
SfuI TTCGAA 1 cut(s) 2423
SgrAI CRCCGGYG 1 cut(s) 271
SinI GGWCC 7 cut(s) 184, 214, 397, 468, 1070, 1126, 2521
SmaI CCCGGG 1 cut(s) 286
SmlI CTYRAG 3 cut(s) 1939, 1974, 2567
SmoI CTYRAG 3 cut(s) 1939, 1974, 2567
SspMI CTAG 6 cut(s) 1038, 1497, 2375, 2445, 2477, 2819
StyD4I CCNGG 9 cut(s) 99, 111, 283, 284, 343, 511, 1633, 1861, 2517
StyI CCWWGG 3 cut(s) 1005, 2295, 2380
TaaI ACNGT 3 cut(s) 635, 658, 1630
TaiI ACGT 2 cut(s) 315, 2161
TaqI TCGA 8 cut(s) 125, 170, 297, 500, 902, 2412, 2423, 2799
TaqII GACCGA 1 cut(s) 2538
TatI WGTACW 5 cut(s) 189, 237, 798, 1682, 2415
TauI GCSGC 4 cut(s) 121, 229, 271, 2732
TscAI CASTG 5 cut(s) 640, 663, 1353, 2227, 2650
TseFI GTSAC 7 cut(s) 202, 440, 805, 842, 1624, 2222, 2447
Tsp45I GTSAC 7 cut(s) 202, 440, 805, 842, 1624, 2222, 2447
TspGWI ACGGA 4 cut(s) 83, 221, 248, 2598
TspMI CCCGGG 1 cut(s) 284
TspRI CASTG 5 cut(s) 640, 663, 1353, 2227, 2650
Tth111I GACNNNGTC 2 cut(s) 1285, 2585
Vha464I CTTAAG 1 cut(s) 2567
VpaK11BI GGWCC 7 cut(s) 184, 214, 397, 468, 1070, 1126, 2521
VspI ATTAAT 1 cut(s) 1521
XapI RAATTY 5 cut(s) 836, 955, 1353, 1492, 1836
XceI RCATGY 1 cut(s) 1424
XmaI CCCGGG 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 1309
XmnI GAANNNNTTC 3 cut(s) 293, 836, 2787
XspI CTAG 6 cut(s) 1038, 1497, 2375, 2445, 2477, 2819
Zsp2I ATGCAT 5 cut(s) 1509, 1746, 1917, 2305, 2394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.