Rmu_co8353763.1_g000001

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8353763.1
OG0000527
Physical Location & Seq
Reverse (-)
604 .. 1053
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8353763.1_g000001.1.cds

Sequence Viewer

Length: 450 bp
cgaggcgcgaaagtggaggtgcgcacagaagaagaaggcttccacggcgcgtggttcccggcgacgatcctggagccgccgtcgaatccttcttcggttctcggcaggaaacgaaagagcttcaactcgaacaaggtcttggtccagtacaacaccttcgtcacggagaaggacccaaccaaaccgctgacggagtacaccaacgtcatgttcctccggccgtcgccgccggtggaggctcccgggaagacattcgaggccggcgaagacgtggacgcgtttcacaacgacgcgtggtggccgggagtggtgatgagtgtggaaggaggggacaggtacagggtggggtttagggacccgccggagttgctggtgcttggccggagtgagttgaggagtcacttgaattgggtcaacgagatttggtccagaccatacaagaaggtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

149

Amino Acids

16.97

Weight (kDa)

7.05

Isoelectric Point (pI)

52.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 23
AccII CGCG 4 cut(s) 8, 50, 278, 293
AciI CCGC 4 cut(s) 77, 185, 227, 359
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 3 cut(s) 218, 299, 379
AfaI GTAC 3 cut(s) 149, 197, 338
AflIII ACRYGT 2 cut(s) 276, 291
AgsI TTSAA 2 cut(s) 124, 406
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 1 cut(s) 69
AjuI GAANNNNNNNTTGG 4 cut(s) 122, 154, 194, 226
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
AlwI GGATC 1 cut(s) 61
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 4 cut(s) 218, 258, 299, 379
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 3 cut(s) 8, 24, 50
AspS9I GGNCC 4 cut(s) 142, 172, 355, 426
AsuC2I CCSGG 4 cut(s) 59, 243, 244, 303
AsuHPI GGTGA 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 4 cut(s) 142, 172, 355, 426
BarI GAAGNNNNNNTAC 2 cut(s) 140, 172
BbsI GAAGAC 2 cut(s) 254, 273
BceAI ACGGC 3 cut(s) 61, 64, 205
BciT130I CCWGG 1 cut(s) 71
BcnI CCSGG 4 cut(s) 59, 243, 244, 303
BisI GCNGC 2 cut(s) 77, 227
BlsI GCNGC 2 cut(s) 78, 228
Bme1390I CCNGG 5 cut(s) 59, 71, 243, 244, 303
Bme18I GGWCC 4 cut(s) 142, 172, 355, 426
BmeT110I CYCGRG 1 cut(s) 242
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 4 cut(s) 142, 172, 355, 426
BmiI GGNNCC 6 cut(s) 56, 75, 174, 240, 356, 357
BmrFI CCNGG 5 cut(s) 59, 71, 243, 244, 303
BpiI GAAGAC 2 cut(s) 254, 273
BpmI CTGGAG 1 cut(s) 92
BpuMI CCSGG 4 cut(s) 59, 243, 244, 303
BsaJI CCNNGG 2 cut(s) 43, 242
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bse118I RCCGGY 2 cut(s) 229, 260
Bse1I ACTGG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 43, 242
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 409
BseX3I CGGCCG 1 cut(s) 218
Bsh1236I CGCG 4 cut(s) 8, 50, 278, 293
Bsh1285I CGRYCG 1 cut(s) 221
BshFI GGCC 4 cut(s) 220, 260, 301, 381
BsiEI CGRYCG 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 8 cut(s) 59, 217, 230, 243, 261, 302, 362, 382
BslFI GGGAC 2 cut(s) 344, 368
BsmFI GGGAC 2 cut(s) 344, 368
BsnI GGCC 4 cut(s) 220, 260, 301, 381
BsoBI CYCGRG 1 cut(s) 242
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 4 cut(s) 77, 185, 227, 359
BspANI GGCC 4 cut(s) 220, 260, 301, 381
BspFNI CGCG 4 cut(s) 8, 50, 278, 293
BspLI GGNNCC 6 cut(s) 56, 75, 174, 240, 356, 357
BspPI GGATC 1 cut(s) 61
BsrFI RCCGGY 2 cut(s) 229, 260
BsrI ACTGG 1 cut(s) 145
BssAI RCCGGY 2 cut(s) 229, 260
BssECI CCNNGG 2 cut(s) 43, 242
BssMI GATC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 262
BstDSI CCRYGG 1 cut(s) 43
BstFNI CGCG 4 cut(s) 8, 50, 278, 293
BstHHI GCGC 3 cut(s) 8, 24, 50
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMCI CGRYCG 1 cut(s) 221
BstMWI GCNNNNNNNGC 3 cut(s) 45, 226, 367
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 5 cut(s) 57, 69, 241, 242, 301
BstUI CGCG 4 cut(s) 8, 50, 278, 293
BstV2I GAAGAC 2 cut(s) 254, 273
BstZI CGGCCG 1 cut(s) 218
BsuRI GGCC 4 cut(s) 220, 260, 301, 381
BtgI CCRYGG 1 cut(s) 43
BtrI CACGTC 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 262
CfoI GCGC 3 cut(s) 8, 24, 50
Cfr10I RCCGGY 2 cut(s) 229, 260
Cfr13I GGNCC 4 cut(s) 142, 172, 355, 426
Cfr9I CCCGGG 1 cut(s) 242
CseI GACGC 2 cut(s) 284, 299
Csp6I GTAC 3 cut(s) 148, 196, 337
CviAII CATG 1 cut(s) 208
CviJI RGCY 8 cut(s) 39, 76, 120, 220, 239, 260, 301, 381
CviKI_1 RGCY 8 cut(s) 39, 76, 120, 220, 239, 260, 301, 381
CviQI GTAC 3 cut(s) 148, 196, 337
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EaeI YGGCCR 3 cut(s) 218, 299, 379
EagI CGGCCG 1 cut(s) 218
EclXI CGGCCG 1 cut(s) 218
Eco47I GGWCC 4 cut(s) 142, 172, 355, 426
Eco52I CGGCCG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 242
EcoO109I RGGNCCY 2 cut(s) 172, 355
EcoRII CCWGG 1 cut(s) 69
FaeI CATG 1 cut(s) 211
FaiI YATR 3 cut(s) 209, 436, 448
FaqI GGGAC 2 cut(s) 344, 368
FatI CATG 1 cut(s) 207
FauI CCCGC 1 cut(s) 366
Fnu4HI GCNGC 2 cut(s) 77, 227
Fsp4HI GCNGC 2 cut(s) 77, 227
FspAI RTGCGCAY 1 cut(s) 23
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 3 cut(s) 7, 23, 49
GluI GCNGC 2 cut(s) 77, 227
GsuI CTGGAG 1 cut(s) 92
HaeIII GGCC 4 cut(s) 220, 260, 301, 381
HapII CCGG 8 cut(s) 59, 217, 230, 243, 261, 302, 362, 382
HgaI GACGC 2 cut(s) 284, 299
HhaI GCGC 3 cut(s) 8, 24, 50
Hin1II CATG 1 cut(s) 211
Hin6I GCGC 3 cut(s) 6, 22, 48
HinP1I GCGC 3 cut(s) 6, 22, 48
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 2 cut(s) 85, 397
HpaII CCGG 8 cut(s) 59, 217, 230, 243, 261, 302, 362, 382
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 3 cut(s) 198, 274, 415
Hpy188III TCNNGA 1 cut(s) 429
Hpy8I GTNNAC 3 cut(s) 198, 274, 415
Hpy99I CGWCG 4 cut(s) 67, 85, 226, 293
HpyAV CCTTC 6 cut(s) 29, 99, 163, 166, 317, 436
HpyCH4IV ACGT 2 cut(s) 204, 270
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 226, 367
HpySE526I ACGT 2 cut(s) 204, 270
Hsp92II CATG 1 cut(s) 211
HspAI GCGC 3 cut(s) 6, 22, 48
KflI GGGWCCC 1 cut(s) 355
KroI GCCGGC 1 cut(s) 260
KroNI GCCGGC 1 cut(s) 262
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 2 cut(s) 73, 244
MaeII ACGT 2 cut(s) 204, 270
MaeIII GTNAC 2 cut(s) 160, 398
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 5 cut(s) 41, 44, 84, 259, 278
MluCI AATT 1 cut(s) 406
MluI ACGCGT 2 cut(s) 276, 291
MlyI GAGTC 1 cut(s) 406
MnlI CCTC 6 cut(s) 10, 224, 229, 250, 320, 387
MroNI GCCGGC 1 cut(s) 260
MroXI GAANNNNTTC 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 187
MspI CCGG 8 cut(s) 59, 217, 230, 243, 261, 302, 362, 382
MspR9I CCNGG 5 cut(s) 59, 71, 243, 244, 303
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 4 cut(s) 8, 50, 278, 293
MwoI GCNNNNNNNGC 3 cut(s) 45, 226, 367
NaeI GCCGGC 1 cut(s) 262
NciI CCSGG 4 cut(s) 59, 243, 244, 303
NdeII GATC 1 cut(s) 66
NgoMIV GCCGGC 1 cut(s) 260
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 6 cut(s) 56, 75, 174, 240, 356, 357
NmeAIII GCCGAG 1 cut(s) 81
NmuCI GTSAC 2 cut(s) 160, 398
NsbI TGCGCA 1 cut(s) 23
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PdiI GCCGGC 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 85
PfoI TCCNGGA 1 cut(s) 69
PkrI GCNGC 2 cut(s) 78, 228
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
PpuMI RGGWCCY 2 cut(s) 172, 355
Psp5II RGGWCCY 2 cut(s) 172, 355
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 6 cut(s) 56, 75, 174, 240, 356, 357
PspPI GGNCC 4 cut(s) 142, 172, 355, 426
PspPPI RGGWCCY 2 cut(s) 172, 355
RsaI GTAC 3 cut(s) 149, 197, 338
RsaNI GTAC 3 cut(s) 148, 196, 337
SatI GCNGC 2 cut(s) 77, 227
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 4 cut(s) 142, 172, 355, 426
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 5 cut(s) 59, 71, 243, 244, 303
SetI ASST 8 cut(s) 21, 122, 138, 158, 207, 273, 338, 447
SgrAI CRCCGGYG 1 cut(s) 229
SinI GGWCC 4 cut(s) 142, 172, 355, 426
SmaI CCCGGG 1 cut(s) 244
Sse9I AATT 1 cut(s) 406
SsiI CCGC 4 cut(s) 77, 185, 227, 359
StyD4I CCNGG 5 cut(s) 57, 69, 241, 242, 301
TaiI ACGT 2 cut(s) 207, 273
TaqI TCGA 3 cut(s) 83, 128, 255
TasI AATT 1 cut(s) 406
TatI WGTACW 2 cut(s) 147, 195
TauI GCSGC 2 cut(s) 79, 229
TfiI GAWTC 1 cut(s) 85
TseFI GTSAC 2 cut(s) 160, 398
Tsp45I GTSAC 2 cut(s) 160, 398
TspGWI ACGGA 2 cut(s) 179, 206
TspMI CCCGGG 1 cut(s) 242
VpaK11BI GGWCC 4 cut(s) 142, 172, 355, 426
XmaI CCCGGG 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.