MD07G1101600.v1.1

agenet domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000527
Physical Location & Seq
Reverse (-)
11261343 .. 11261867
525 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1101600.v1.1.491

Sequence Viewer

Length: 525 bp
ATGGTGGTCAAGAAAAGTCAATCAGCAACCCATTTGGTCAAGGATTCAAGGGTGGAAGTTTGTAGTAATGAAGATGGCTTCAAGGGCGCATGGTTCCCTACCAAAATCATTGACTCGAAACCCTGGATTTCGGCGACGAAGAAGAAAAGGAAGAGCTTTTCTGACGGCATCAACAACTCCTTCTTACCTACCAAGGCTGAGGTCCAGTACAAGACTCTGCTCTCCGACAACGACCCGGACAAGCCCCTGACGGAGTTTGTCGAGATGGGTCAAATCCGGCTGGTGCCTCCAGACGACAATGTCGACAGGCCCTTCGAGCCCGGCGACAAAGTCAACGCCTTTCACCTCAAAGCGTGGTGGCCCGAGGTTGTGATCAAGTGCGAGAATGATGAGTACACGGTGGGGTTCATGTACCCACCTGATCTGCTTGTGCTACGGCGGTTCGAATTGCGTTCTCACTGGGATTTGGCAGACGGCATTTGGGTCCGATCCAAAAAGGAAGTATTGGTTCTGGGTTTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

175

Amino Acids

20.11

Weight (kDa)

6.84

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 16 - 97 9.8e-13 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 283
AccI GTMKAC 1 cut(s) 303
AciI CCGC 1 cut(s) 439
AclWI GGATC 1 cut(s) 483
AfaI GTAC 3 cut(s) 209, 395, 413
AgsI TTSAA 2 cut(s) 48, 82
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
AlwI GGATC 1 cut(s) 483
Ama87I CYCGRG 1 cut(s) 362
AoxI GGCC 2 cut(s) 308, 359
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 4 cut(s) 202, 309, 360, 484
AsuC2I CCSGG 2 cut(s) 236, 321
AsuHPI GGTGA 1 cut(s) 335
AsuII TTCGAA 1 cut(s) 444
AvaI CYCGRG 1 cut(s) 362
AvaII GGWCC 2 cut(s) 202, 484
BanI GGYRCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 321
BbvCI CCTCAGC 1 cut(s) 198
BccI CCATC 2 cut(s) 68, 259
BceAI ACGGC 3 cut(s) 181, 452, 490
BciT130I CCWGG 1 cut(s) 124
BclI TGATCA 1 cut(s) 372
BcnI CCSGG 2 cut(s) 236, 321
Bme1390I CCNGG 3 cut(s) 124, 236, 321
Bme18I GGWCC 2 cut(s) 202, 484
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 4 cut(s) 202, 309, 360, 484
BmiI GGNNCC 3 cut(s) 95, 285, 485
BmrFI CCNGG 3 cut(s) 124, 236, 321
BmrI ACTGGG 1 cut(s) 469
BmsI GCATC 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 198
Bpu14I TTCGAA 1 cut(s) 444
BpuMI CCSGG 2 cut(s) 236, 321
BsaJI CCNNGG 3 cut(s) 122, 192, 363
Bse1I ACTGG 2 cut(s) 205, 464
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 3 cut(s) 122, 192, 363
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 2 cut(s) 205, 464
BshFI GGCC 2 cut(s) 310, 361
BshNI GGYRCC 1 cut(s) 283
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 3 cut(s) 236, 277, 321
BsnI GGCC 2 cut(s) 310, 361
BsoBI CYCGRG 1 cut(s) 362
Bsp119I TTCGAA 1 cut(s) 444
Bsp1286I GDGCHC 1 cut(s) 321
Bsp143I GATC 3 cut(s) 372, 421, 488
BspACI CCGC 1 cut(s) 439
BspANI GGCC 2 cut(s) 310, 361
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 3 cut(s) 95, 285, 485
BspPI GGATC 1 cut(s) 483
BspQI GCTCTTC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 283
BsrI ACTGG 2 cut(s) 205, 464
BssECI CCNNGG 3 cut(s) 122, 192, 363
BssMI GATC 3 cut(s) 372, 421, 488
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 444
BstDEI CTNAG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 3 cut(s) 375, 424, 491
BstMBI GATC 3 cut(s) 372, 421, 488
BstMWI GCNNNNNNNGC 2 cut(s) 84, 316
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 3 cut(s) 122, 234, 319
BsuRI GGCC 2 cut(s) 310, 361
BtsIMutI CAGTG 1 cut(s) 457
CfoI GCGC 1 cut(s) 89
Cfr13I GGNCC 4 cut(s) 202, 309, 360, 484
Csp6I GTAC 3 cut(s) 208, 394, 412
CviAII CATG 2 cut(s) 90, 409
CviJI RGCY 8 cut(s) 78, 156, 197, 244, 280, 310, 319, 361
CviKI_1 RGCY 8 cut(s) 78, 156, 197, 244, 280, 310, 319, 361
CviQI GTAC 3 cut(s) 208, 394, 412
DdeI CTNAG 1 cut(s) 198
DpnI GATC 3 cut(s) 374, 423, 490
DpnII GATC 3 cut(s) 372, 421, 488
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 1 cut(s) 321
Eco47I GGWCC 2 cut(s) 202, 484
Eco88I CYCGRG 1 cut(s) 362
EcoO109I RGGNCCY 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 2 cut(s) 93, 412
FaiI YATR 2 cut(s) 91, 410
FatI CATG 2 cut(s) 89, 408
FbaI TGATCA 1 cut(s) 372
FblI GTMKAC 1 cut(s) 303
FriOI GRGCYC 1 cut(s) 321
GlaI GCGC 1 cut(s) 88
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 2 cut(s) 310, 361
HapII CCGG 3 cut(s) 236, 277, 321
HhaI GCGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 93, 412
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HincII GTYRAC 2 cut(s) 304, 334
HindII GTYRAC 2 cut(s) 304, 334
HinfI GANTC 3 cut(s) 44, 113, 214
HpaII CCGG 3 cut(s) 236, 277, 321
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 3 cut(s) 304, 334, 396
Hpy188I TCNGA 3 cut(s) 163, 226, 488
Hpy188III TCNNGA 3 cut(s) 10, 262, 290
Hpy8I GTNNAC 3 cut(s) 304, 334, 396
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 190, 322
HpyCH4III ACNGT 1 cut(s) 400
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 316
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 2 cut(s) 93, 412
HspAI GCGC 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 3 cut(s) 372, 421, 488
LguI GCTCTTC 1 cut(s) 146
LweI GCATC 1 cut(s) 177
MalI GATC 3 cut(s) 374, 423, 490
MboI GATC 3 cut(s) 372, 421, 488
MboII GAAGA 4 cut(s) 83, 151, 154, 163
MhlI GDGCHC 1 cut(s) 321
MluCI AATT 1 cut(s) 446
MlyI GAGTC 2 cut(s) 107, 208
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 4 cut(s) 193, 297, 356, 358
MspI CCGG 3 cut(s) 236, 277, 321
MspR9I CCNGG 3 cut(s) 124, 236, 321
MvaI CCWGG 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 84, 316
NciI CCSGG 2 cut(s) 236, 321
NdeII GATC 3 cut(s) 372, 421, 488
NlaIII CATG 2 cut(s) 93, 412
NlaIV GGNNCC 3 cut(s) 95, 285, 485
NspV TTCGAA 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 2 cut(s) 300, 321
PfeI GAWTC 1 cut(s) 44
PflFI GACNNNGTC 2 cut(s) 299, 329
PleI GAGTC 2 cut(s) 107, 208
PpsI GAGTC 2 cut(s) 107, 208
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 3 cut(s) 95, 285, 485
PspPI GGNCC 4 cut(s) 202, 309, 360, 484
PsyI GACNNNGTC 2 cut(s) 299, 329
RsaI GTAC 3 cut(s) 209, 395, 413
RsaNI GTAC 3 cut(s) 208, 394, 412
SalI GTCGAC 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 146
Sau3AI GATC 3 cut(s) 372, 421, 488
Sau96I GGNCC 4 cut(s) 202, 309, 360, 484
SchI GAGTC 2 cut(s) 107, 208
ScrFI CCNGG 3 cut(s) 124, 236, 321
SduI GDGCHC 1 cut(s) 321
SetI ASST 6 cut(s) 158, 190, 204, 348, 369, 421
SfaNI GCATC 1 cut(s) 177
SfuI TTCGAA 1 cut(s) 444
SinI GGWCC 2 cut(s) 202, 484
Sse9I AATT 1 cut(s) 446
SsiI CCGC 1 cut(s) 439
StyD4I CCNGG 3 cut(s) 122, 234, 319
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 400
TaqI TCGA 5 cut(s) 116, 261, 303, 315, 444
TasI AATT 1 cut(s) 446
TatI WGTACW 2 cut(s) 207, 393
TfiI GAWTC 1 cut(s) 44
TscAI CASTG 1 cut(s) 464
TspDTI ATGAA 2 cut(s) 84, 397
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 464
Tth111I GACNNNGTC 2 cut(s) 299, 329
VpaK11BI GGWCC 2 cut(s) 202, 484
XmiI GTMKAC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.