Rmu_sc0035726.1_g000001

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035726.1
OG0000527
Physical Location & Seq
Reverse (-)
2 .. 350
349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035726.1_g000001.1.cds

Sequence Viewer

Length: 349 bp
atggaggagcaggagagcaatggtggccataaccctgttgggtatttcacccaaggcgccaacgtcgaagtttgcagcaaagaaaaagggtctgaaggtgcatggttccctgcaacaatcttagagccaccagcaaactcctcagcctcaaaaagaaagacctttacttccaacaaggttttgattcggtacaagactcttgtctccgacaaggaccccaccaagccacttgtcgagcacaccaccttggggcttctccggccgccgcttccggctgacaatgcggaggaggagaggtttgaggagaacgacgtcgttgatgcttttcaccttgaaggttggtggactg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

116

Amino Acids

12.92

Weight (kDa)

4.91

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 56
AciI CCGC 3 cut(s) 263, 266, 284
AcoI YGGCCR 2 cut(s) 25, 260
AcuI CTGAAG 1 cut(s) 114
AcyI GRCGYC 2 cut(s) 57, 312
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 249
AgsI TTSAA 1 cut(s) 335
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 208
AoxI GGCC 2 cut(s) 25, 260
ApeKI GCWGC 1 cut(s) 75
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 40, 320
AvaII GGWCC 1 cut(s) 214
BalI TGGCCA 1 cut(s) 27
BanI GGYRCC 1 cut(s) 56
Bbv12I GWGCWC 1 cut(s) 240
BbvCI CCTCAGC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 208
BfoI RGCGCY 1 cut(s) 60
BisI GCNGC 3 cut(s) 76, 263, 266
BlsI GCNGC 3 cut(s) 77, 264, 267
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 3 cut(s) 58, 107, 216
BmsI GCATC 1 cut(s) 310
BoxI GACNNNNGTC 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 142
BsaHI GRCGYC 2 cut(s) 57, 312
BsaJI CCNNGG 2 cut(s) 52, 246
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 52, 246
BseLI CCNNNNNNNGG 1 cut(s) 249
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 156
BseRI GAGGAG 5 cut(s) 20, 130, 302, 305, 317
BseX3I CGGCCG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 87
Bsh1285I CGRYCG 1 cut(s) 263
BshFI GGCC 2 cut(s) 27, 262
BshNI GGYRCC 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 263
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 2 cut(s) 259, 272
BslI CCNNNNNNNGG 1 cut(s) 249
BsmAI GTCTC 1 cut(s) 208
BsnI GGCC 2 cut(s) 27, 262
Bsp1286I GDGCHC 1 cut(s) 240
BspACI CCGC 3 cut(s) 263, 266, 284
BspANI GGCC 2 cut(s) 27, 262
BspCNI CTCAG 1 cut(s) 155
BspLI GGNNCC 3 cut(s) 58, 107, 216
BspT107I GGYRCC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 52, 246
BssNI GRCGYC 2 cut(s) 57, 312
BssT1I CCWWGG 2 cut(s) 52, 246
BstACI GRCGYC 2 cut(s) 57, 312
BstDEI CTNAG 2 cut(s) 121, 142
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 1 cut(s) 59
BstMAI GTCTC 1 cut(s) 208
BstMCI CGRYCG 1 cut(s) 263
BstMWI GCNNNNNNNGC 3 cut(s) 24, 259, 281
BstPAI GACNNNNGTC 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 87
BstZI CGGCCG 1 cut(s) 260
BsuRI GGCC 2 cut(s) 27, 262
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 1 cut(s) 190
CviAII CATG 1 cut(s) 102
CviJI RGCY 7 cut(s) 27, 127, 146, 226, 253, 262, 275
CviKI_1 RGCY 7 cut(s) 27, 127, 146, 226, 253, 262, 275
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 2 cut(s) 121, 142
DinI GGCGCC 1 cut(s) 58
EaeI YGGCCR 2 cut(s) 25, 260
EagI CGGCCG 1 cut(s) 260
EclXI CGGCCG 1 cut(s) 260
Eco130I CCWWGG 2 cut(s) 52, 246
Eco47I GGWCC 1 cut(s) 214
Eco52I CGGCCG 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 52, 246
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 2 cut(s) 52, 246
FaeI CATG 1 cut(s) 105
FaiI YATR 2 cut(s) 30, 103
FatI CATG 1 cut(s) 101
Fnu4HI GCNGC 3 cut(s) 76, 263, 266
Fsp4HI GCNGC 3 cut(s) 76, 263, 266
GlaI GCGC 1 cut(s) 58
GluI GCNGC 3 cut(s) 76, 263, 266
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 2 cut(s) 27, 262
HapII CCGG 2 cut(s) 259, 272
HhaI GCGC 1 cut(s) 59
Hin1I GRCGYC 2 cut(s) 57, 312
Hin1II CATG 1 cut(s) 105
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 2 cut(s) 184, 196
HpaII CCGG 2 cut(s) 259, 272
HphI GGTGA 2 cut(s) 40, 320
Hpy166II GTNNAC 1 cut(s) 345
Hpy188I TCNGA 2 cut(s) 94, 208
Hpy8I GTNNAC 1 cut(s) 345
Hpy99I CGWCG 3 cut(s) 68, 314, 317
HpyAV CCTTC 2 cut(s) 89, 329
HpyCH4IV ACGT 2 cut(s) 63, 312
HpyCH4V TGCA 3 cut(s) 75, 101, 113
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 259, 281
HpyF3I CTNAG 2 cut(s) 121, 142
HpySE526I ACGT 2 cut(s) 63, 312
Hsp92I GRCGYC 2 cut(s) 57, 312
Hsp92II CATG 1 cut(s) 105
HspAI GCGC 1 cut(s) 57
KasI GGCGCC 1 cut(s) 56
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 5 cut(s) 48, 123, 144, 272, 285
Lsp1109I GCAGC 1 cut(s) 87
LweI GCATC 1 cut(s) 310
MaeII ACGT 2 cut(s) 63, 312
MhlI GDGCHC 1 cut(s) 240
MlsI TGGCCA 1 cut(s) 27
MluNI TGGCCA 1 cut(s) 27
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 2 cut(s) 195, 231
MnlI CCTC 6 cut(s) 151, 157, 280, 283, 288, 295
Mox20I TGGCCA 1 cut(s) 27
MscI TGGCCA 1 cut(s) 27
Msp20I TGGCCA 1 cut(s) 27
MspI CCGG 2 cut(s) 259, 272
MwoI GCNNNNNNNGC 3 cut(s) 24, 259, 281
NarI GGCGCC 1 cut(s) 57
NlaIII CATG 1 cut(s) 105
NlaIV GGNNCC 3 cut(s) 58, 107, 216
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 3 cut(s) 77, 264, 267
PleI GAGTC 1 cut(s) 190
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 190
PpuMI RGGWCCY 1 cut(s) 214
PshAI GACNNNNGTC 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 214
PspN4I GGNNCC 3 cut(s) 58, 107, 216
PspPI GGNCC 1 cut(s) 214
PspPPI RGGWCCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SatI GCNGC 3 cut(s) 76, 263, 266
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 1 cut(s) 190
SduI GDGCHC 1 cut(s) 240
SetI ASST 9 cut(s) 66, 100, 164, 180, 248, 299, 315, 333, 340
SfaNI GCATC 1 cut(s) 310
SfoI GGCGCC 1 cut(s) 58
SinI GGWCC 1 cut(s) 214
SsiI CCGC 3 cut(s) 263, 266, 284
SspDI GGCGCC 1 cut(s) 56
StyI CCWWGG 2 cut(s) 52, 246
TaiI ACGT 2 cut(s) 66, 315
TaqI TCGA 2 cut(s) 66, 234
TauI GCSGC 2 cut(s) 265, 268
TfiI GAWTC 1 cut(s) 184
TseI GCWGC 1 cut(s) 75
VpaK11BI GGWCC 1 cut(s) 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
ZraI GACGTC 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.