FvH4_7g26470

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000527
Physical Location & Seq
Reverse (-)
19979260 .. 19984021
4762 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26470.t1

Sequence Viewer

Length: 1125 bp
ATGGAGGAGCAGGAGAGCAATGGTGGGTATCTCAGCCAAGGCGCCAACGTTGAAGTTTGCAGCAAAGAGAAAGGGTCAGAAGGTGCATGGTTCCCTGCAACAATCTTGGAGCCACCAACAAACCCATCATCCTCAAAGAGAAAGACCTTTACTTCCAGCAAGGTTTTGATTCAGTACAAGACTCTTGTCTCCGACCGGGACCCCACCAAGCTACATGTCGAGCACACCACCGTGGCGCTTCTCAGGCTGGCGCCTCCGGCGGACGATGCGGAGATGTTTGAGCAGAACGACGTCGTTGATGCGTTTTATCTTGATGGGTGGTGGCCTGGGGTGGTGATGAGTGTTGTTGGGGAGAAGTATAGAGTTGGGTTTAGGAACCCTCCGGATGTGTTGGAGCTAGAGGGCAGAGGGTTGAGGTCACATTGGGATTGGGACAATGGGGTTTGGACCAGAGCTCCAAGAAAGGTGTTGAAGGGATCAAATTACGAGCCAGGGACAGCAGTTGAAGTGAATTTGCAAAGAAATCATCTATGGTTTTCTTGGTTACCTGCATTTTTCATTGGTCAACTAGGGGATGACTCTTTCTTGGTGCAATACAGATATAAAACCCCAGAAAACGGTAATGAGAATGGTGTTGTTAAAGTAGTTGTAGCTGACCATCAGATTCGACCTCGCCCTCCACAGCAAGAGGAAAATGATTTTGTCTTGTTGCAAATGGTGGATGCATTCTATGACATGGGTTGGTGGGTTGGGGATATCACAAAAGTTCTTAAACACAAGAAGTACATTGTCACTTTCAAATTCACCAAGGAGGAGAAGGAATTTTCTCATTCAGACATAAGATGCCACTTGGAATGGTTTGATAAACACTGGACATTCTGGAGTAGCTTTTCGGGGTTTCGTTCTACTAAGGATTATGGAGCACAACCGAGTCATGTACGTGAAAGTTCCAGTAATTCTGTAGGCAAAACACCTTGTCATACCAACTTTAGGATGAAGCAGTTGAGTCCTCGCATGGATAAGTTACTTTGTGGAAAAACCACAGGCAAATTCAAAATATCTCAGCATCTTGGTGATGGTTCAAGATTTTTAAGTCCCTCTCCCTGTGAGAACTTAAAAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

375

Amino Acids

42.77

Weight (kDa)

7.2

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 14 - 86 1.6e-10 Agenet domain
Agenet PF05641 165 - 227 3e-07 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 294
Acc36I ACCTGC 1 cut(s) 556
AccB1I GGYRCC 2 cut(s) 41, 250
AccIII TCCGGA 1 cut(s) 382
AciI CCGC 2 cut(s) 260, 269
AclI AACGTT 1 cut(s) 48
AclWI GGATC 1 cut(s) 484
AcsI RAATTY 4 cut(s) 511, 800, 821, 1049
AcyI GRCGYC 3 cut(s) 42, 251, 291
AfaI GTAC 3 cut(s) 176, 785, 939
AfiI CCNNNNNNNGG 2 cut(s) 617, 990
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 6 cut(s) 53, 472, 506, 799, 1054, 1083
AjnI CCWGG 2 cut(s) 325, 490
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 5 cut(s) 211, 397, 455, 653, 888
AluI AGCT 5 cut(s) 211, 397, 455, 653, 888
Alw21I GWGCWC 3 cut(s) 225, 457, 925
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 1 cut(s) 484
Aor13HI TCCGGA 1 cut(s) 382
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 1 cut(s) 60
ApoI RAATTY 4 cut(s) 511, 800, 821, 1049
AspLEI GCGC 3 cut(s) 44, 238, 253
AspS9I GGNCC 2 cut(s) 199, 447
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 3 cut(s) 346, 796, 1085
AvaII GGWCC 2 cut(s) 199, 447
BanI GGYRCC 2 cut(s) 41, 250
BanII GRGCYC 1 cut(s) 457
Bbv12I GWGCWC 3 cut(s) 225, 457, 925
BbvI GCAGC 1 cut(s) 72
BccI CCATC 4 cut(s) 133, 308, 666, 1070
BciT130I CCWGG 2 cut(s) 327, 492
BcnI CCSGG 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 2 cut(s) 398, 569
BfmI CTRYAG 1 cut(s) 960
BfoI RGCGCY 3 cut(s) 45, 239, 254
BfuAI ACCTGC 1 cut(s) 556
BisI GCNGC 1 cut(s) 61
BlsI GCNGC 1 cut(s) 62
Bme1390I CCNGG 3 cut(s) 197, 327, 492
Bme18I GGWCC 2 cut(s) 199, 447
BmgT120I GGNCC 2 cut(s) 199, 447
BmiI GGNNCC 7 cut(s) 43, 92, 111, 200, 201, 252, 377
BmrFI CCNGG 3 cut(s) 197, 327, 492
BmsI GCATC 5 cut(s) 256, 289, 712, 833, 1075
BoxI GACNNNNGTC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 901
BpuMI CCSGG 1 cut(s) 197
BsaAI YACGTR 1 cut(s) 941
BsaHI GRCGYC 3 cut(s) 42, 251, 291
BsaJI CCNNGG 5 cut(s) 37, 231, 326, 491, 807
BsaWI WCCGGW 1 cut(s) 382
BsaXI ACNNNNNCTCC 2 cut(s) 439, 469
Bsc4I CCNNNNNNNGG 2 cut(s) 617, 990
Bse1I ACTGG 2 cut(s) 875, 951
Bse3DI GCAATG 1 cut(s) 25
BseAI TCCGGA 1 cut(s) 382
BseBI CCWGG 2 cut(s) 327, 492
BseDI CCNNGG 5 cut(s) 37, 231, 326, 491, 807
BseGI GGATG 5 cut(s) 128, 391, 580, 727, 999
BseLI CCNNNNNNNGG 2 cut(s) 617, 990
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 3 cut(s) 46, 256, 1076
BseNI ACTGG 2 cut(s) 875, 951
BseRI GAGGAG 2 cut(s) 20, 827
BseXI GCAGC 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 1 cut(s) 325
BshNI GGYRCC 2 cut(s) 41, 250
BsiEI CGRYCG 1 cut(s) 196
BsiHKAI GWGCWC 3 cut(s) 225, 457, 925
BsiSI CCGG 3 cut(s) 196, 257, 383
BslFI GGGAC 4 cut(s) 212, 446, 508, 1080
BslI CCNNNNNNNGG 2 cut(s) 617, 990
BsmAI GTCTC 1 cut(s) 193
BsmFI GGGAC 4 cut(s) 212, 446, 508, 1080
BsmI GAATGC 1 cut(s) 725
BsnI GGCC 1 cut(s) 325
Bsp1286I GDGCHC 3 cut(s) 225, 457, 925
Bsp13I TCCGGA 1 cut(s) 382
Bsp143I GATC 1 cut(s) 476
BspACI CCGC 2 cut(s) 260, 269
BspANI GGCC 1 cut(s) 325
BspCNI CTCAG 3 cut(s) 45, 255, 1075
BspEI TCCGGA 1 cut(s) 382
BspLI GGNNCC 7 cut(s) 43, 92, 111, 200, 201, 252, 377
BspMI ACCTGC 1 cut(s) 556
BspPI GGATC 1 cut(s) 484
BspT107I GGYRCC 2 cut(s) 41, 250
BsrDI GCAATG 1 cut(s) 25
BsrI ACTGG 2 cut(s) 875, 951
BssECI CCNNGG 5 cut(s) 37, 231, 326, 491, 807
BssMI GATC 1 cut(s) 476
BssNI GRCGYC 3 cut(s) 42, 251, 291
BssT1I CCWWGG 2 cut(s) 37, 807
Bst2UI CCWGG 2 cut(s) 327, 492
Bst4CI ACNGT 2 cut(s) 232, 620
BstACI GRCGYC 3 cut(s) 42, 251, 291
BstBAI YACGTR 1 cut(s) 941
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 4 cut(s) 32, 242, 909, 1062
BstDSI CCRYGG 1 cut(s) 231
BstEII GGTNACC 1 cut(s) 543
BstF5I GGATG 5 cut(s) 128, 391, 580, 727, 999
BstH2I RGCGCY 3 cut(s) 45, 239, 254
BstHHI GCGC 3 cut(s) 44, 238, 253
BstKTI GATC 1 cut(s) 479
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 476
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 3 cut(s) 244, 257, 266
BstNI CCWGG 2 cut(s) 327, 492
BstNSI RCATGY 1 cut(s) 218
BstPAI GACNNNNGTC 1 cut(s) 185
BstPI GGTNACC 1 cut(s) 543
BstSCI CCNGG 3 cut(s) 195, 325, 490
BstSFI CTRYAG 1 cut(s) 960
BstV1I GCAGC 1 cut(s) 72
BsuRI GGCC 1 cut(s) 325
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 5 cut(s) 128, 391, 580, 727, 999
BtsIMutI CAGTG 1 cut(s) 868
BveI ACCTGC 1 cut(s) 556
Cac8I GCNNGC 1 cut(s) 249
CfoI GCGC 3 cut(s) 44, 238, 253
Cfr13I GGNCC 2 cut(s) 199, 447
Csp6I GTAC 3 cut(s) 175, 784, 938
CviAII CATG 5 cut(s) 87, 215, 736, 935, 1015
CviQI GTAC 3 cut(s) 175, 784, 938
DdeI CTNAG 4 cut(s) 32, 242, 909, 1062
DinI GGCGCC 2 cut(s) 43, 252
DpnI GATC 1 cut(s) 478
DpnII GATC 1 cut(s) 476
EciI GGCGGA 1 cut(s) 275
Ecl136II GAGCTC 1 cut(s) 455
Eco130I CCWWGG 2 cut(s) 37, 807
Eco24I GRGCYC 1 cut(s) 457
Eco32I GATATC 1 cut(s) 757
Eco47I GGWCC 2 cut(s) 199, 447
Eco53kI GAGCTC 1 cut(s) 455
Eco91I GGTNACC 1 cut(s) 543
EcoICRI GAGCTC 1 cut(s) 455
EcoO109I RGGNCCY 1 cut(s) 199
EcoO65I GGTNACC 1 cut(s) 543
EcoRII CCWGG 2 cut(s) 325, 490
EcoRV GATATC 1 cut(s) 757
EcoT14I CCWWGG 2 cut(s) 37, 807
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 1 cut(s) 457
EgeI GGCGCC 2 cut(s) 43, 252
EheI GGCGCC 2 cut(s) 43, 252
ErhI CCWWGG 2 cut(s) 37, 807
FaeI CATG 5 cut(s) 90, 218, 739, 938, 1018
FaqI GGGAC 4 cut(s) 212, 446, 508, 1080
FatI CATG 5 cut(s) 86, 214, 735, 934, 1014
Fnu4HI GCNGC 1 cut(s) 61
FokI GGATG 5 cut(s) 115, 398, 587, 734, 1006
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 1 cut(s) 61
FspBI CTAG 2 cut(s) 398, 569
GlaI GCGC 3 cut(s) 43, 237, 252
GluI GCNGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 901
HaeII RGCGCY 3 cut(s) 45, 239, 254
HaeIII GGCC 1 cut(s) 325
HapII CCGG 3 cut(s) 196, 257, 383
HhaI GCGC 3 cut(s) 44, 238, 253
Hin1I GRCGYC 3 cut(s) 42, 251, 291
Hin1II CATG 5 cut(s) 90, 218, 739, 938, 1018
Hin6I GCGC 3 cut(s) 42, 236, 251
HinP1I GCGC 3 cut(s) 42, 236, 251
HincII GTYRAC 1 cut(s) 566
HindII GTYRAC 1 cut(s) 566
HinfI GANTC 6 cut(s) 169, 181, 578, 664, 931, 1006
HpaII CCGG 3 cut(s) 196, 257, 383
HphI GGTGA 3 cut(s) 346, 796, 1085
Hpy166II GTNNAC 1 cut(s) 566
Hpy188I TCNGA 4 cut(s) 79, 193, 663, 835
Hpy188III TCNNGA 4 cut(s) 311, 383, 880, 1083
Hpy8I GTNNAC 1 cut(s) 566
Hpy99I CGWCG 2 cut(s) 293, 296
HpyAV CCTTC 3 cut(s) 74, 466, 811
HpyCH4III ACNGT 2 cut(s) 232, 620
HpyCH4IV ACGT 3 cut(s) 48, 291, 940
HpyCH4V TGCA 8 cut(s) 60, 86, 98, 517, 551, 592, 712, 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 244, 257, 266
HpyF3I CTNAG 4 cut(s) 32, 242, 909, 1062
HpySE526I ACGT 3 cut(s) 48, 291, 940
Hsp92I GRCGYC 3 cut(s) 42, 251, 291
Hsp92II CATG 5 cut(s) 90, 218, 739, 938, 1018
HspAI GCGC 3 cut(s) 42, 236, 251
KasI GGCGCC 2 cut(s) 41, 250
KflI GGGWCCC 1 cut(s) 199
Kpn2I TCCGGA 1 cut(s) 382
Kzo9I GATC 1 cut(s) 476
LmnI GCTCC 5 cut(s) 7, 109, 394, 460, 920
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 5 cut(s) 256, 289, 712, 833, 1075
MaeI CTAG 2 cut(s) 398, 569
MaeII ACGT 3 cut(s) 48, 291, 940
MaeIII GTNAC 4 cut(s) 417, 543, 790, 1023
MalI GATC 1 cut(s) 478
MboI GATC 1 cut(s) 476
MhlI GDGCHC 3 cut(s) 225, 457, 925
MluCI AATT 6 cut(s) 481, 511, 800, 821, 955, 1049
Mly113I GGCGCC 2 cut(s) 42, 251
MlyI GAGTC 4 cut(s) 175, 572, 940, 1015
MmeI TCCRAC 2 cut(s) 216, 372
Mph1103I ATGCAT 1 cut(s) 727
MroI TCCGGA 1 cut(s) 382
MseI TTAA 4 cut(s) 639, 771, 1091, 1115
MslI CAYNNNNRTG 3 cut(s) 230, 939, 1071
MspI CCGG 3 cut(s) 196, 257, 383
MspR9I CCNGG 3 cut(s) 197, 327, 492
Mva1269I GAATGC 1 cut(s) 725
MvaI CCWGG 2 cut(s) 327, 492
MwoI GCNNNNNNNGC 3 cut(s) 244, 257, 266
NarI GGCGCC 2 cut(s) 42, 251
NciI CCSGG 1 cut(s) 197
NdeII GATC 1 cut(s) 476
NlaIII CATG 5 cut(s) 90, 218, 739, 938, 1018
NlaIV GGNNCC 7 cut(s) 43, 92, 111, 200, 201, 252, 377
NmuCI GTSAC 2 cut(s) 417, 790
NsiI ATGCAT 1 cut(s) 727
NspI RCATGY 1 cut(s) 218
OliI CACNNNNGTG 1 cut(s) 230
PciI ACATGT 1 cut(s) 214
PctI GAATGC 1 cut(s) 725
PfeI GAWTC 2 cut(s) 169, 664
PkrI GCNGC 1 cut(s) 62
PleI GAGTC 4 cut(s) 175, 572, 939, 1014
PluTI GGCGCC 2 cut(s) 45, 254
PpsI GAGTC 4 cut(s) 175, 572, 939, 1014
Ppu21I YACGTR 1 cut(s) 941
PpuMI RGGWCCY 1 cut(s) 199
PscI ACATGT 1 cut(s) 214
PshAI GACNNNNGTC 1 cut(s) 185
Psp124BI GAGCTC 1 cut(s) 457
Psp1406I AACGTT 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 199
Psp6I CCWGG 2 cut(s) 325, 490
PspEI GGTNACC 1 cut(s) 543
PspGI CCWGG 2 cut(s) 325, 490
PspN4I GGNNCC 7 cut(s) 43, 92, 111, 200, 201, 252, 377
PspPI GGNCC 2 cut(s) 199, 447
PspPPI RGGWCCY 1 cut(s) 199
RsaI GTAC 3 cut(s) 176, 785, 939
RsaNI GTAC 3 cut(s) 175, 784, 938
RseI CAYNNNNRTG 3 cut(s) 230, 939, 1071
SacI GAGCTC 1 cut(s) 457
SaqAI TTAA 4 cut(s) 639, 771, 1091, 1115
SatI GCNGC 1 cut(s) 61
Sau3AI GATC 1 cut(s) 476
Sau96I GGNCC 2 cut(s) 199, 447
SchI GAGTC 4 cut(s) 175, 572, 940, 1015
ScrFI CCNGG 3 cut(s) 197, 327, 492
SduI GDGCHC 3 cut(s) 225, 457, 925
SfaNI GCATC 5 cut(s) 256, 289, 712, 833, 1075
SfcI CTRYAG 1 cut(s) 960
SfoI GGCGCC 2 cut(s) 43, 252
SinI GGWCC 2 cut(s) 199, 447
SmiMI CAYNNNNRTG 3 cut(s) 230, 939, 1071
Sse9I AATT 6 cut(s) 481, 511, 800, 821, 955, 1049
SsiI CCGC 2 cut(s) 260, 269
SspDI GGCGCC 2 cut(s) 41, 250
SspMI CTAG 2 cut(s) 398, 569
SstI GAGCTC 1 cut(s) 457
StyD4I CCNGG 3 cut(s) 195, 325, 490
StyI CCWWGG 2 cut(s) 37, 807
TaaI ACNGT 2 cut(s) 232, 620
TaiI ACGT 3 cut(s) 51, 294, 943
TaqI TCGA 2 cut(s) 219, 667
TasI AATT 6 cut(s) 481, 511, 800, 821, 955, 1049
TatI WGTACW 2 cut(s) 174, 783
TfiI GAWTC 2 cut(s) 169, 664
Tru1I TTAA 4 cut(s) 639, 771, 1091, 1115
Tru9I TTAA 4 cut(s) 639, 771, 1091, 1115
TscAI CASTG 1 cut(s) 875
TseFI GTSAC 2 cut(s) 417, 790
TseI GCWGC 1 cut(s) 60
Tsp45I GTSAC 2 cut(s) 417, 790
TspDTI ATGAA 2 cut(s) 547, 1010
TspRI CASTG 1 cut(s) 875
VpaK11BI GGWCC 2 cut(s) 199, 447
XapI RAATTY 4 cut(s) 511, 800, 821, 1049
XceI RCATGY 1 cut(s) 218
XspI CTAG 2 cut(s) 398, 569
ZraI GACGTC 1 cut(s) 292
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.