RLG00000001149

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000527
Physical Location & Seq
Forward (+)
10890319 .. 10890784
466 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001149

Sequence Viewer

Length: 354 bp
ATGAAGAACCCGAAGGAGGAGATCAGTTGTCTCCCATGTAGGATTTTCAGCCGCGGCTCGAAAGTTAAGGTGGGCACCAAACAAGGTGCATGGTTTCCTGCTTATGTCCTGGACCCAAATCCGAACGAGTCCCCATTCTGGCTTCGGAATTGGAAGCCAGAGTTGCTAGTGGAGTATGAAACTCTTGTCGACAAAAACAACCCTTCAAAGCCGCTGACGGAGGAAATCGAGGTGGGTTTGGTCTGGCCATCACGGCCTGCGAAGGAGGGTTTGAGAGATTGGGCTCGGGGAGTTGCGGCGGCATTGGGATTGGTGCTGCAGCGAGTGGAGTTGGGCCGGGAAAGAGGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

118

Amino Acids

13.31

Weight (kDa)

9.26

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 54
AciI CCGC 5 cut(s) 52, 54, 212, 296, 299
AcoI YGGCCR 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 16, 138
AgsI TTSAA 1 cut(s) 207
AjnI CCWGG 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 285
AoxI GGCC 3 cut(s) 245, 254, 334
ApeKI GCWGC 2 cut(s) 316, 319
AspS9I GGNCC 2 cut(s) 112, 334
AsuC2I CCSGG 1 cut(s) 338
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 77
BalI TGGCCA 1 cut(s) 247
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 286
BbvI GCAGC 2 cut(s) 303, 331
BccI CCATC 1 cut(s) 256
BceAI ACGGC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 110
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 317
BglI GCCNNNNNGGC 1 cut(s) 253
BisI GCNGC 7 cut(s) 52, 55, 212, 297, 300, 317, 320
BlsI GCNGC 7 cut(s) 53, 56, 213, 298, 301, 318, 321
Bme1390I CCNGG 2 cut(s) 110, 338
Bme18I GGWCC 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 2 cut(s) 112, 334
BmiI GGNNCC 2 cut(s) 76, 114
BmrFI CCNGG 2 cut(s) 110, 338
BpuMI CCSGG 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 52
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 138
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 52
BseLI CCNNNNNNNGG 2 cut(s) 16, 138
BseRI GAGGAG 1 cut(s) 32
BseSI GKGCMC 1 cut(s) 77
BseXI GCAGC 2 cut(s) 303, 331
Bsh1236I CGCG 1 cut(s) 54
BshFI GGCC 3 cut(s) 247, 256, 336
BshNI GGYRCC 1 cut(s) 74
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 1 cut(s) 337
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 16, 138
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 3 cut(s) 247, 256, 336
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 2 cut(s) 77, 286
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 5 cut(s) 52, 54, 212, 296, 299
BspANI GGCC 3 cut(s) 247, 256, 336
BspFNI CGCG 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 76, 114
BspMAI CTGCAG 1 cut(s) 321
BspT107I GGYRCC 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 54
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 163, 253
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 2 cut(s) 108, 336
BstSFI CTRYAG 1 cut(s) 317
BstSLI GKGCMC 1 cut(s) 77
BstUI CGCG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 303, 331
BsuRI GGCC 3 cut(s) 247, 256, 336
BtgI CCRYGG 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 258
Cfr13I GGNCC 2 cut(s) 112, 334
Cfr42I CCGCGG 1 cut(s) 55
CviAII CATG 2 cut(s) 36, 90
CviJI RGCY 9 cut(s) 51, 57, 142, 157, 211, 247, 256, 284, 336
CviKI_1 RGCY 9 cut(s) 51, 57, 142, 157, 211, 247, 256, 284, 336
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
EaeI YGGCCR 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 286
FaeI CATG 2 cut(s) 39, 93
FaiI YATR 4 cut(s) 37, 91, 105, 177
FaqI GGGAC 1 cut(s) 115
FatI CATG 2 cut(s) 35, 89
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 7 cut(s) 52, 55, 212, 297, 300, 317, 320
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 7 cut(s) 52, 55, 212, 297, 300, 317, 320
FspBI CTAG 1 cut(s) 167
GluI GCNGC 7 cut(s) 52, 55, 212, 297, 300, 317, 320
HaeIII GGCC 3 cut(s) 247, 256, 336
HapII CCGG 1 cut(s) 337
Hin1II CATG 2 cut(s) 39, 93
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 123, 147
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 7, 213, 256
HpyCH4V TGCA 2 cut(s) 89, 319
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 253
Hsp92II CATG 2 cut(s) 39, 93
KspI CCGCGG 1 cut(s) 55
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 8 cut(s) 95, 111, 122, 124, 171, 229, 270, 350
Lsp1109I GCAGC 2 cut(s) 303, 331
MaeI CTAG 1 cut(s) 167
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 77, 286
MlsI TGGCCA 1 cut(s) 247
MluCI AATT 1 cut(s) 148
MluNI TGGCCA 1 cut(s) 247
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 5 cut(s) 10, 214, 223, 259, 338
Mox20I TGGCCA 1 cut(s) 247
MscI TGGCCA 1 cut(s) 247
MseI TTAA 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 247
MspA1I CMGCKG 2 cut(s) 54, 214
MspI CCGG 1 cut(s) 337
MspR9I CCNGG 2 cut(s) 110, 338
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 54
MwoI GCNNNNNNNGC 2 cut(s) 163, 253
NciI CCSGG 1 cut(s) 338
NdeII GATC 1 cut(s) 21
NlaIII CATG 2 cut(s) 39, 93
NlaIV GGNNCC 2 cut(s) 76, 114
PfoI TCCNGGA 1 cut(s) 108
PkrI GCNGC 7 cut(s) 53, 56, 213, 298, 301, 318, 321
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 76, 114
PspPI GGNCC 2 cut(s) 112, 334
PstI CTGCAG 1 cut(s) 321
SacII CCGCGG 1 cut(s) 55
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 7 cut(s) 52, 55, 212, 297, 300, 317, 320
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 2 cut(s) 112, 334
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 2 cut(s) 110, 338
SduI GDGCHC 2 cut(s) 77, 286
SetI ASST 5 cut(s) 72, 88, 234, 349, 353
SfcI CTRYAG 1 cut(s) 317
SfiI GGCCNNNNNGGCC 1 cut(s) 253
Sfr303I CCGCGG 1 cut(s) 55
SgrBI CCGCGG 1 cut(s) 55
SinI GGWCC 1 cut(s) 112
Sse9I AATT 1 cut(s) 148
SsiI CCGC 5 cut(s) 52, 54, 212, 296, 299
SspMI CTAG 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 108, 336
TaqI TCGA 3 cut(s) 59, 189, 228
TasI AATT 1 cut(s) 148
TauI GCSGC 5 cut(s) 54, 57, 214, 299, 302
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseI GCWGC 2 cut(s) 316, 319
TspDTI ATGAA 2 cut(s) 17, 192
TspGWI ACGGA 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.