FvH4_1g01620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001210
Physical Location & Seq
Forward (+)
868467 .. 868927
461 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01620.t1

Sequence Viewer

Length: 345 bp
ATGACTACCTTGGGGATTTCAGGGATGGTGTTCCGGAGTGTTTTTGAAGGAAGCTTGTCAATGCAGGACACCGAAATTGAGCGAAGGCCATACCATAAAAACTGCAATTGCGCGCTACACAGGTCAAAAGGGGGTGCATGCTCAAATGCCTGTCCACAAAGGATCATTTGCTTCCCCAGGAAACAATCATGGACAGATGGCTCCTTATGCATGTCAGCAGCAACTTCTAAAGTCTCATCTCATCCTGGAAGTACATCCAGTAAGTCCACTGGAAACAAAGAAATTGCGAGTGGAGTTCAGTCCTTGTCACATAGACAATATAAAGAAGTTTCAGAAGCTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.34

Weight (kDa)

9.12

Isoelectric Point (pI)

71.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 33
AclWI GGATC 1 cut(s) 170
AfaI GTAC 1 cut(s) 253
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 2 cut(s) 176, 244
AluBI AGCT 2 cut(s) 54, 338
AluI AGCT 2 cut(s) 54, 338
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 33
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 218
AspLEI GCGC 2 cut(s) 113, 115
BbvI GCAGC 1 cut(s) 230
BccI CCATC 2 cut(s) 19, 191
BciT130I CCWGG 2 cut(s) 178, 246
BcoDI GTCTC 1 cut(s) 238
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 2 cut(s) 178, 246
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 2 cut(s) 178, 246
BsaJI CCNNGG 2 cut(s) 9, 176
BsaWI WCCGGW 1 cut(s) 33
Bse1I ACTGG 2 cut(s) 258, 274
BseAI TCCGGA 1 cut(s) 33
BseBI CCWGG 2 cut(s) 178, 246
BseDI CCNNGG 2 cut(s) 9, 176
BseGI GGATG 3 cut(s) 30, 241, 254
BseNI ACTGG 2 cut(s) 258, 274
BsePI GCGCGC 1 cut(s) 111
BseXI GCAGC 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 238
BsnI GGCC 1 cut(s) 88
Bsp13I TCCGGA 1 cut(s) 33
Bsp143I GATC 1 cut(s) 162
BspANI GGCC 1 cut(s) 88
BspEI TCCGGA 1 cut(s) 33
BspFNI CGCG 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 202
BspPI GGATC 1 cut(s) 170
BsrI ACTGG 2 cut(s) 258, 274
BssECI CCNNGG 2 cut(s) 9, 176
BssHII GCGCGC 1 cut(s) 111
BssMI GATC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 178, 246
BstC8I GCNNGC 2 cut(s) 113, 139
BstF5I GGATG 3 cut(s) 30, 241, 254
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 2 cut(s) 113, 115
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNI CCWGG 2 cut(s) 178, 246
BstNSI RCATGY 2 cut(s) 141, 214
BstSCI CCNGG 2 cut(s) 176, 244
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 3 cut(s) 30, 241, 254
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 2 cut(s) 113, 139
CfoI GCGC 2 cut(s) 113, 115
Csp6I GTAC 1 cut(s) 252
CviAII CATG 3 cut(s) 138, 189, 211
CviJI RGCY 4 cut(s) 54, 88, 201, 338
CviKI_1 RGCY 4 cut(s) 54, 88, 201, 338
CviQI GTAC 1 cut(s) 252
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 9
EcoRII CCWGG 2 cut(s) 176, 244
EcoT14I CCWWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 3 cut(s) 141, 192, 214
FaiI YATR 8 cut(s) 91, 96, 139, 190, 208, 212, 312, 321
FatI CATG 3 cut(s) 137, 188, 210
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 3 cut(s) 37, 228, 241
Fsp4HI GCNGC 1 cut(s) 219
GlaI GCGC 2 cut(s) 112, 114
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 34
HhaI GCGC 2 cut(s) 113, 115
Hin1II CATG 3 cut(s) 141, 192, 214
Hin6I GCGC 2 cut(s) 111, 113
HinP1I GCGC 2 cut(s) 111, 113
HindIII AAGCTT 2 cut(s) 52, 336
HpaII CCGG 1 cut(s) 34
Hpy166II GTNNAC 2 cut(s) 155, 267
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 2 cut(s) 155, 267
HpyAV CCTTC 2 cut(s) 41, 78
HpyCH4V TGCA 4 cut(s) 64, 105, 137, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
Hsp92II CATG 3 cut(s) 141, 192, 214
HspAI GCGC 2 cut(s) 111, 113
Kpn2I TCCGGA 1 cut(s) 33
Kzo9I GATC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 206
Lsp1109I GCAGC 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 306
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MfeI CAATTG 1 cut(s) 106
MluCI AATT 3 cut(s) 75, 106, 282
Mph1103I ATGCAT 1 cut(s) 212
MroI TCCGGA 1 cut(s) 33
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 178, 246
MunI CAATTG 1 cut(s) 106
MvaI CCWGG 2 cut(s) 178, 246
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 207
NdeII GATC 1 cut(s) 162
NlaIII CATG 3 cut(s) 141, 192, 214
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 306
NsiI ATGCAT 1 cut(s) 212
NspI RCATGY 2 cut(s) 141, 214
PaeI GCATGC 1 cut(s) 141
PauI GCGCGC 1 cut(s) 111
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 176, 244
PspGI CCWGG 2 cut(s) 176, 244
PspN4I GGNNCC 1 cut(s) 202
PteI GCGCGC 1 cut(s) 111
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 162
ScrFI CCNGG 2 cut(s) 178, 246
SetI ASST 4 cut(s) 11, 56, 125, 340
SphI GCATGC 1 cut(s) 141
Sse9I AATT 3 cut(s) 75, 106, 282
StyD4I CCNGG 2 cut(s) 176, 244
StyI CCWWGG 1 cut(s) 9
TasI AATT 3 cut(s) 75, 106, 282
TatI WGTACW 1 cut(s) 251
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 306
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 306
TspRI CASTG 1 cut(s) 274
XceI RCATGY 2 cut(s) 141, 214
Zsp2I ATGCAT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.