RLG00000015769

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
1317437 .. 1318144
708 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015769

Sequence Viewer

Length: 321 bp
ATGCTTCAGTGTGTCTTAGAAGGAAGCATGTCATTGCATGACCTGGAGGTTGAGCATAGGCCATACCACCGTAATTGCAGCTGTGCAATGCACAAGGTGAAGGGTAGTTGCTCCAACGACACTTGCTCTCATCAGTCGAATATTTCGTTCCCCAGGAAACAGCCTCAATCTTGTTGCTGGCTCAACACTAAGGAACAAAGAAGACTGAGTGCACCATTTCATGCAAAGTACACAAACATACATAGCTCAGGCTGCTCAGCACAGCACAGCAAGAAGAAAAGAGGGGAAACCGTGGAACTAAAGCATGTCATATCTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.05

Weight (kDa)

9.14

Isoelectric Point (pI)

70.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 97
AfaI GTAC 1 cut(s) 230
AjnI CCWGG 2 cut(s) 42, 152
AluBI AGCT 2 cut(s) 81, 246
AluI AGCT 2 cut(s) 81, 246
Alw21I GWGCWC 1 cut(s) 214
Alw44I GTGCAC 1 cut(s) 210
AoxI GGCC 1 cut(s) 59
ApaLI GTGCAC 1 cut(s) 210
ApeKI GCWGC 2 cut(s) 78, 252
AsuHPI GGTGA 1 cut(s) 109
BaeGI GKGCMC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 2 cut(s) 90, 239
BciT130I CCWGG 2 cut(s) 44, 154
BisI GCNGC 2 cut(s) 79, 253
BlpI GCTNAGC 1 cut(s) 256
BlsI GCNGC 2 cut(s) 80, 254
Bme1390I CCNGG 2 cut(s) 44, 154
BmrFI CCNGG 2 cut(s) 44, 154
BpiI GAAGAC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 247
Bpu1102I GCTNAGC 1 cut(s) 256
BsaJI CCNNGG 2 cut(s) 152, 291
Bse3DI GCAATG 2 cut(s) 32, 93
BseBI CCWGG 2 cut(s) 44, 154
BseDI CCNNGG 2 cut(s) 152, 291
BseMI GCAATG 2 cut(s) 32, 93
BseMII CTCAG 3 cut(s) 197, 261, 270
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 2 cut(s) 90, 239
BshFI GGCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 214
BsnI GGCC 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 214
Bsp1720I GCTNAGC 1 cut(s) 256
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 3 cut(s) 198, 260, 269
BsrDI GCAATG 2 cut(s) 32, 93
BssECI CCNNGG 2 cut(s) 152, 291
Bst2UI CCWGG 2 cut(s) 44, 154
Bst4CI ACNGT 2 cut(s) 71, 292
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 5 cut(s) 16, 189, 206, 247, 256
BstDSI CCRYGG 1 cut(s) 291
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNI CCWGG 2 cut(s) 44, 154
BstNSI RCATGY 2 cut(s) 31, 308
BstSCI CCNGG 2 cut(s) 42, 152
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 2 cut(s) 90, 239
BstV2I GAAGAC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 229
CspCI CAANNNNNGTGG 2 cut(s) 56, 91
CviAII CATG 4 cut(s) 28, 38, 221, 305
CviJI RGCY 6 cut(s) 61, 81, 163, 181, 246, 252
CviKI_1 RGCY 6 cut(s) 61, 81, 163, 181, 246, 252
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 5 cut(s) 16, 189, 206, 247, 256
DraIII CACNNNGTG 1 cut(s) 97
EcoRII CCWGG 2 cut(s) 42, 152
FaeI CATG 4 cut(s) 31, 41, 224, 308
FaiI YATR 9 cut(s) 29, 39, 57, 64, 222, 239, 243, 306, 311
FatI CATG 4 cut(s) 27, 37, 220, 304
Fnu4HI GCNGC 2 cut(s) 79, 253
Fsp4HI GCNGC 2 cut(s) 79, 253
GluI GCNGC 2 cut(s) 79, 253
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 1 cut(s) 61
Hin1II CATG 4 cut(s) 31, 41, 224, 308
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 212, 231
Hpy8I GTNNAC 2 cut(s) 212, 231
HpyAV CCTTC 2 cut(s) 14, 94
HpyCH4III ACNGT 2 cut(s) 71, 292
HpyCH4V TGCA 6 cut(s) 37, 78, 86, 91, 212, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpyF3I CTNAG 5 cut(s) 16, 189, 206, 247, 256
Hsp92II CATG 4 cut(s) 31, 41, 224, 308
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 6 cut(s) 29, 56, 139, 163, 166, 234
Lsp1109I GCAGC 2 cut(s) 90, 239
MboII GAAGA 2 cut(s) 213, 286
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 3 cut(s) 40, 174, 275
MspA1I CMGCKG 1 cut(s) 81
MspR9I CCNGG 2 cut(s) 44, 154
MvaI CCWGG 2 cut(s) 44, 154
MwoI GCNNNNNNNGC 1 cut(s) 252
NlaIII CATG 4 cut(s) 31, 41, 224, 308
NspI RCATGY 2 cut(s) 31, 308
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PkrI GCNGC 2 cut(s) 80, 254
Psp6I CCWGG 2 cut(s) 42, 152
PspGI CCWGG 2 cut(s) 42, 152
PvuII CAGCTG 1 cut(s) 81
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SatI GCNGC 2 cut(s) 79, 253
ScrFI CCNGG 2 cut(s) 44, 154
SduI GDGCHC 1 cut(s) 214
SetI ASST 6 cut(s) 45, 51, 83, 99, 248, 320
Sse9I AATT 1 cut(s) 73
SspI AATATT 1 cut(s) 142
StyD4I CCNGG 2 cut(s) 42, 152
TaaI ACNGT 2 cut(s) 71, 292
TaqI TCGA 1 cut(s) 137
TasI AATT 1 cut(s) 73
TatI WGTACW 1 cut(s) 228
TscAI CASTG 1 cut(s) 14
TseI GCWGC 2 cut(s) 78, 252
TspDTI ATGAA 1 cut(s) 209
TspRI CASTG 1 cut(s) 14
VneI GTGCAC 1 cut(s) 210
XceI RCATGY 2 cut(s) 31, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.