MD15G1158800.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
11804221 .. 11804526
306 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1158800.v1.1.491

Sequence Viewer

Length: 306 bp
ATGTCTAGTGCAGGAGTTGCCGGAATGATGTTTCAGTGTGTGTTTGAAGGAAGCCTTTCAATGCAAGACACCGAGATTGGGCGAAGGCCATACCATAAGAACTGCAGTTGTGCTTTGCATTCCAAGGCCGACGCCAGTGGTTGCCCCAATGCTTGTCAAAGGAACATTTCCTTTCCCAAGAAACAGTCTTGGAGCGATAGTTCCCTGTCAATGATGGCAGCAGCAACATCTAAATTCTCTCGTCATCTAGTCGGTTACATGTCCATGTCACACTGGCAACAGAGAAAGTATGAATGTGGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.16

Weight (kDa)

9.04

Isoelectric Point (pI)

75.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 132
AfiI CCNNNNNNNGG 1 cut(s) 78
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 2 cut(s) 47, 60
AloI GAACNNNNNNTCC 2 cut(s) 184, 216
AoxI GGCC 2 cut(s) 86, 126
ApeKI GCWGC 2 cut(s) 218, 221
ApoI RAATTY 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 55
BbvI GCAGC 2 cut(s) 230, 233
BccI CCATC 1 cut(s) 208
BfaI CTAG 2 cut(s) 6, 248
BfmI CTRYAG 1 cut(s) 103
BisI GCNGC 2 cut(s) 219, 222
BlsI GCNGC 2 cut(s) 220, 223
BmiI GGNNCC 1 cut(s) 301
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 78
Bse1I ACTGG 2 cut(s) 135, 278
BseDI CCNNGG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 78
BseNI ACTGG 2 cut(s) 135, 278
BseXI GCAGC 2 cut(s) 230, 233
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 2 cut(s) 88, 128
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 78
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 2 cut(s) 88, 128
BspANI GGCC 2 cut(s) 88, 128
BspLI GGNNCC 1 cut(s) 301
BspMAI CTGCAG 1 cut(s) 107
BsrI ACTGG 2 cut(s) 135, 278
BssECI CCNNGG 1 cut(s) 123
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 132
BstAPI GCANNNNNTGC 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 230, 233
BsuRI GGCC 2 cut(s) 88, 128
BtsIMutI CAGTG 3 cut(s) 41, 142, 271
CseI GACGC 1 cut(s) 140
CviAII CATG 2 cut(s) 259, 265
CviJI RGCY 3 cut(s) 54, 88, 128
CviKI_1 RGCY 3 cut(s) 54, 88, 128
Eco130I CCWWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 2 cut(s) 262, 268
FaiI YATR 5 cut(s) 91, 96, 260, 266, 291
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 2 cut(s) 258, 264
Fnu4HI GCNGC 2 cut(s) 219, 222
Fsp4HI GCNGC 2 cut(s) 219, 222
FspBI CTAG 2 cut(s) 6, 248
GluI GCNGC 2 cut(s) 219, 222
HaeIII GGCC 2 cut(s) 88, 128
HapII CCGG 1 cut(s) 21
HgaI GACGC 1 cut(s) 140
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 2 cut(s) 262, 268
HpaII CCGG 1 cut(s) 21
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 41, 78
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 4 cut(s) 11, 64, 105, 118
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 2 cut(s) 262, 268
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 4 cut(s) 34, 148, 218, 259
Lsp1109I GCAGC 2 cut(s) 230, 233
MaeI CTAG 2 cut(s) 6, 248
MaeIII GTNAC 2 cut(s) 254, 267
MluCI AATT 1 cut(s) 233
MroXI GAANNNNTTC 1 cut(s) 55
MslI CAYNNNNRTG 1 cut(s) 263
MspI CCGG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 118
MwoI GCNNNNNNNGC 1 cut(s) 17
NlaIII CATG 2 cut(s) 262, 268
NlaIV GGNNCC 1 cut(s) 301
NmuCI GTSAC 1 cut(s) 267
NspI RCATGY 1 cut(s) 262
PciI ACATGT 1 cut(s) 258
PctI GAATGC 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 220, 223
PscI ACATGT 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 301
PstI CTGCAG 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 263
SatI GCNGC 2 cut(s) 219, 222
SfcI CTRYAG 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 263
Sse9I AATT 1 cut(s) 233
SspMI CTAG 2 cut(s) 6, 248
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 186
TasI AATT 1 cut(s) 233
TscAI CASTG 3 cut(s) 41, 142, 278
TseFI GTSAC 1 cut(s) 267
TseI GCWGC 2 cut(s) 218, 221
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 1 cut(s) 306
TspRI CASTG 3 cut(s) 41, 142, 278
XapI RAATTY 1 cut(s) 233
XceI RCATGY 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 55
XspI CTAG 2 cut(s) 6, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.