Prupe.7G254400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001210
Physical Location & Seq
Forward (+)
21397935 .. 21400081
2147 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G254400.1

Sequence Viewer

Length: 285 bp
ATGACTAGCGCAGGAGTTGCTGGGATGATGTTTCAGTGTGTGTTTGAAGGAAGCCTCTCAATGCGGGACTCCGAAATTGAGCTAAGGCCTTACCATAAGAACTGCAGTTGCGCTCTGCACAGGTCCGAGGGGGGTGTTTGCTCCAATGCTTGTCAAAGGAACATTTCTTTTCCCAAGAAACAGCCATGGAGTGACGGTTTCTTGTGCATGCAGGCAGCAGCTTCTTCCAAATTCTCTTCTCCTCTCTTATTACCGATGAGTTTTCTGGTATGGACTTGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.48

Weight (kDa)

8.27

Isoelectric Point (pI)

67.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 64
AcsI RAATTY 1 cut(s) 230
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 1 cut(s) 47
AluBI AGCT 2 cut(s) 82, 221
AluI AGCT 2 cut(s) 82, 221
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 2 cut(s) 215, 218
ApoI RAATTY 1 cut(s) 230
AspLEI GCGC 2 cut(s) 11, 113
AspS9I GGNCC 1 cut(s) 123
AvaII GGWCC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 227, 230
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 103
BisI GCNGC 2 cut(s) 216, 219
BlsI GCNGC 2 cut(s) 217, 220
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 83
BsaJI CCNNGG 2 cut(s) 126, 185
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
BseDI CCNNGG 2 cut(s) 126, 185
BseGI GGATG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 231
BseXI GCAGC 2 cut(s) 227, 230
BseYI CCCAGC 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 1 cut(s) 88
BslFI GGGAC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 1 cut(s) 88
Bsp19I CCATGG 1 cut(s) 185
BspACI CCGC 1 cut(s) 64
BspANI GGCC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 126, 185
BssT1I CCWWGG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 241
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 209, 213
BstDEI CTNAG 1 cut(s) 83
BstDSI CCRYGG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 30
BstHHI GCGC 2 cut(s) 11, 113
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNSI RCATGY 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 2 cut(s) 227, 230
BsuRI GGCC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 2 cut(s) 209, 213
CfoI GCGC 2 cut(s) 11, 113
Cfr13I GGNCC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 280
CviAII CATG 2 cut(s) 186, 208
CviJI RGCY 5 cut(s) 54, 82, 88, 184, 221
CviKI_1 RGCY 5 cut(s) 54, 82, 88, 184, 221
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 185
Eco147I AGGCCT 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 2 cut(s) 189, 211
FaiI YATR 4 cut(s) 96, 187, 209, 271
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 185, 207
FauI CCCGC 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 216, 219
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 2 cut(s) 216, 219
FspBI CTAG 1 cut(s) 6
GlaI GCGC 2 cut(s) 10, 112
GluI GCNGC 2 cut(s) 216, 219
GsaI CCCAGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 88
HhaI GCGC 2 cut(s) 11, 113
Hin1II CATG 2 cut(s) 189, 211
Hin6I GCGC 2 cut(s) 9, 111
HinP1I GCGC 2 cut(s) 9, 111
HinfI GANTC 1 cut(s) 68
Hpy188I TCNGA 2 cut(s) 73, 127
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4V TGCA 4 cut(s) 105, 118, 207, 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 83
Hsp92II CATG 2 cut(s) 189, 211
HspAI GCGC 2 cut(s) 9, 111
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 6, 106, 197, 251
Lsp1109I GCAGC 2 cut(s) 227, 230
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 191
MboII GAAGA 2 cut(s) 216, 228
MluCI AATT 2 cut(s) 75, 230
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 3 cut(s) 65, 121, 252
MwoI GCNNNNNNNGC 1 cut(s) 17
NcoI CCATGG 1 cut(s) 185
NlaIII CATG 2 cut(s) 189, 211
NmuCI GTSAC 1 cut(s) 191
NspI RCATGY 1 cut(s) 211
PaeI GCATGC 1 cut(s) 211
PceI AGGCCT 1 cut(s) 88
PkrI GCNGC 2 cut(s) 217, 220
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PspFI CCCAGC 1 cut(s) 20
PspPI GGNCC 1 cut(s) 123
PstI CTGCAG 1 cut(s) 107
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SatI GCNGC 2 cut(s) 216, 219
Sau96I GGNCC 1 cut(s) 123
SchI GAGTC 1 cut(s) 62
SetI ASST 3 cut(s) 84, 125, 223
SfcI CTRYAG 1 cut(s) 103
SinI GGWCC 1 cut(s) 123
SphI GCATGC 1 cut(s) 211
Sse9I AATT 2 cut(s) 75, 230
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 6
StuI AGGCCT 1 cut(s) 88
StyI CCWWGG 1 cut(s) 185
TaaI ACNGT 1 cut(s) 197
TasI AATT 2 cut(s) 75, 230
TscAI CASTG 1 cut(s) 41
TseFI GTSAC 1 cut(s) 191
TseI GCWGC 2 cut(s) 215, 218
Tsp45I GTSAC 1 cut(s) 191
TspRI CASTG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 123
XapI RAATTY 1 cut(s) 230
XceI RCATGY 1 cut(s) 211
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.