RchiOBHm_Chr2g0086591

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001210
Physical Location & Seq
Forward (+)
1688050 .. 1688382
333 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46210

Sequence Viewer

Length: 333 bp
ATGACTACCTTTGGAGTCTCTGGTATGATCTTTCAGTGTGTGTTTGAAGGAAGCCTGTCAATGCAGGACACAGAAATTGAGCGAAGACCATACCATAAAAACTGCAATTGTGCACTGCACAAGTCAAAGAGGGGTGCTTGTAGCGATGCCTGTCCTCAACAAAGGAACATTTCCTTCCCCAAGAAACAATTATGGACAGATGGCTCCTTGTGCATTTCAGCAGCAACTTCCAAAATCTCTTCTTCTCAGCATTCTCTTTCAGGCAACGCATCCATGTCCAGAACTGGAAACAGAGACAGTATGAATGAGACTCATTCCTCGACACATAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.12

Weight (kDa)

9.08

Isoelectric Point (pI)

64.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 3 cut(s) 22, 288, 302
Alw44I GTGCAC 1 cut(s) 111
ApaLI GTGCAC 1 cut(s) 111
ApeKI GCWGC 1 cut(s) 221
BaeGI GKGCMC 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 233
BccI CCATC 1 cut(s) 194
BcoDI GTCTC 3 cut(s) 22, 288, 302
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 205
BmsI GCATC 2 cut(s) 136, 278
BpiI GAAGAC 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 289
BseSI GKGCMC 1 cut(s) 115
BseXI GCAGC 1 cut(s) 233
BsgI GTGCAG 1 cut(s) 101
BsiHKAI GWGCWC 1 cut(s) 115
BsmAI GTCTC 3 cut(s) 22, 288, 302
BsmI GAATGC 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 289
BssMI GATC 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 244
BstDEI CTNAG 1 cut(s) 246
BstF5I GGATG 1 cut(s) 269
BstKTI GATC 1 cut(s) 30
BstMAI GTCTC 3 cut(s) 22, 288, 302
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 91
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 269
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 2 cut(s) 41, 113
CviAII CATG 1 cut(s) 274
CviJI RGCY 2 cut(s) 54, 204
CviKI_1 RGCY 2 cut(s) 54, 204
DdeI CTNAG 1 cut(s) 246
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
FaeI CATG 1 cut(s) 277
FaiI YATR 7 cut(s) 26, 91, 96, 193, 275, 302, 327
FatI CATG 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 222
Hin1II CATG 1 cut(s) 277
HinfI GANTC 2 cut(s) 15, 310
Hpy166II GTNNAC 1 cut(s) 113
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 2 cut(s) 41, 184
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4V TGCA 5 cut(s) 64, 105, 113, 118, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 1 cut(s) 277
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 7 cut(s) 6, 50, 68, 163, 246, 270, 292
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 2 cut(s) 136, 278
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 3 cut(s) 96, 231, 234
MfeI CAATTG 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 3 cut(s) 75, 106, 188
MlyI GAGTC 2 cut(s) 24, 304
MnlI CCTC 3 cut(s) 123, 165, 328
MslI CAYNNNNRTG 1 cut(s) 328
MunI CAATTG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 250
MwoI GCNNNNNNNGC 1 cut(s) 210
NdeII GATC 1 cut(s) 27
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 1 cut(s) 205
PctI GAATGC 1 cut(s) 250
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 2 cut(s) 23, 304
PpsI GAGTC 2 cut(s) 23, 304
PspN4I GGNNCC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 328
SatI GCNGC 1 cut(s) 222
Sau3AI GATC 1 cut(s) 27
SchI GAGTC 2 cut(s) 24, 304
SduI GDGCHC 1 cut(s) 115
SetI ASST 1 cut(s) 11
SfaNI GCATC 2 cut(s) 136, 278
SmiMI CAYNNNNRTG 1 cut(s) 328
Sse9I AATT 3 cut(s) 75, 106, 188
TaaI ACNGT 1 cut(s) 299
TaqI TCGA 1 cut(s) 320
TasI AATT 3 cut(s) 75, 106, 188
TscAI CASTG 2 cut(s) 41, 120
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 317
TspRI CASTG 2 cut(s) 41, 120
VneI GTGCAC 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.