Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000449.1

Orthogroup ID

OG0001210

Physical Location & Seq

Genomic Coordinates Forward (+)

16285 .. 17399

Gene Structure 1115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000449.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgagtacctttggagtttctggtatgatgtttcagtatgtgtttgaagaaagcctatcaatgcagggcactgagattgagcgaagaccgtaccataagaactgcaattgtgtgctgcacaagtccaagggtagtgcttgctccaatgctgatcctcagcgaaggaacatttccttctccaagaaacagtcctggagcaacacttccttgtgcatatcagccatagttccttccaaattctcttcatccaaatcctccatgcggatggcaaaaatccccagcggggcggagctccattggatacccgccccaaatggggggagaattcggggacaaatggagaatggggatggggatccccaatccccgctatctaagatcggggatggggcggggatgtggggatggggacggagaatccccaatatatttttattggggattggggcggggatgggggtgaagaattacccccgggatggggatggtattgtgatccccatccccaacccgccccattgccatccctatctatggaccaaggtccacatgcaccaaggcaaaaaatcaactattttaccacccaaatgccccattttatcctccattttgcctatggtccacctacaccttggtccatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.5

Weight (kDa)

9.67

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001210)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01620 FvH4_1g01630 FvH4_1g01640 FvH4_1g01650 FvH4_1g01670 FvH4_1g01700
malus_domestica	MD15G1158700.v1.1 MD15G1158800.v1.1 MD15G1158900.v1.1 MD15G1159000.v1.1 MD15G1159200.v1.1 MD15G1159300.v1.1 MD15G1159500.v1.1
prunus_persica	Prupe.1G525100_v2.0.a1 Prupe.7G253900_v2.0.a1 Prupe.7G254000_v2.0.a1 Prupe.7G254100_v2.0.a1 Prupe.7G254200_v2.0.a1 Prupe.7G254300_v2.0.a1 Prupe.7G254400_v2.0.a1 Prupe.7G254500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086491 RchiOBHm_Chr2g0086581 RchiOBHm_Chr2g0086591 RchiOBHm_Chr2g0086601 RchiOBHm_Chr2g0086611 RchiOBHm_Chr2g0086641 RchiOBHm_Chr4g0393981
rosa_laevigata	RLG00000015769
rosa_multiflora	Rmu_ssc0000449.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154360 Rroxscaffold_2G00154380 Rroxscaffold_2G00154390 Rroxscaffold_2G00154400 Rroxscaffold_2G00154410 Rroxscaffold_2G00154420
rosa_samantha	Rh2AG019000 Rh2AG019100 Rh2AG019200 Rh2AG019300 Rh2AG019600 Rh2AG019700 Rh2BG018600 Rh2BG018700 Rh2BG018800 Rh2BG018900 Rh2BG019100 Rh2BG019200 Rh2BG019300 Rh2BG019400 Rh2BG019500 Rh2BG019600
rosa_wichuraiana	Rw2G001600 Rw2G001610 Rw2G001620 Rw2G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	262, 282, 287, 306, 368, 392, 449, 512
AclWI	GGATC	4 cut(s)	146, 350, 363, 490
AcsI	RAATTY	2 cut(s)	236, 324
AfaI	GTAC	2 cut(s)	7, 92
AfiI	CCNNNNNNNGG	9 cut(s)	261, 283, 315, 316, 317, 479, 480, 481, 534
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	191
AluBI	AGCT	1 cut(s)	292
AluI	AGCT	1 cut(s)	292
Alw21I	GWGCWC	1 cut(s)	294
AlwI	GGATC	4 cut(s)	146, 350, 363, 490
Ama87I	CYCGRG	1 cut(s)	474
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	236, 324
AspS9I	GGNCC	4 cut(s)	537, 544, 619, 635
AsuC2I	CCSGG	2 cut(s)	475, 476
AsuHPI	GGTGA	1 cut(s)	472
AvaI	CYCGRG	1 cut(s)	474
AvaII	GGWCC	4 cut(s)	537, 544, 619, 635
BaeGI	GKGCMC	1 cut(s)	71
BamHI	GGATCC	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	9 cut(s)	259, 344, 380, 399, 448, 473, 479, 509, 531
BciT130I	CCWGG	1 cut(s)	193
BciVI	GTATCC	1 cut(s)	294
BcnI	CCSGG	2 cut(s)	475, 476
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	3 cut(s)	193, 475, 476
Bme18I	GGWCC	4 cut(s)	537, 544, 619, 635
BmeT110I	CYCGRG	1 cut(s)	474
BmgT120I	GGNCC	4 cut(s)	537, 544, 619, 635
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	3 cut(s)	193, 475, 476
BoxI	GACNNNNGTC	1 cut(s)	542
BpiI	GAAGAC	1 cut(s)	91
BpmI	CTGGAG	1 cut(s)	214
Bpu10I	CCTNAGC	1 cut(s)	156
BpuMI	CCSGG	2 cut(s)	475, 476
BsaBI	GATNNNNATC	2 cut(s)	354, 500
BsaJI	CCNNGG	6 cut(s)	126, 473, 474, 540, 556, 631
Bsc4I	CCNNNNNNNGG	9 cut(s)	261, 283, 315, 316, 317, 479, 480, 481, 534
Bse3DI	GCAATG	1 cut(s)	517
Bse8I	GATNNNNATC	2 cut(s)	354, 500
BseBI	CCWGG	1 cut(s)	193
BseDI	CCNNGG	6 cut(s)	126, 473, 474, 540, 556, 631
BseJI	GATNNNNATC	2 cut(s)	354, 500
BseLI	CCNNNNNNNGG	9 cut(s)	261, 283, 315, 316, 317, 479, 480, 481, 534
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	63, 170
BseSI	GKGCMC	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	475
BslFI	GGGAC	2 cut(s)	345, 423
BslI	CCNNNNNNNGG	9 cut(s)	261, 283, 315, 316, 317, 479, 480, 481, 534
BsmFI	GGGAC	2 cut(s)	345, 423
BsoBI	CYCGRG	1 cut(s)	474
Bsp1286I	GDGCHC	2 cut(s)	71, 294
Bsp143I	GATC	4 cut(s)	151, 355, 378, 495
BspACI	CCGC	8 cut(s)	262, 282, 287, 306, 368, 392, 449, 512
BspCNI	CTCAG	2 cut(s)	64, 169
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	4 cut(s)	146, 350, 363, 490
BsrDI	GCAATG	1 cut(s)	517
BssECI	CCNNGG	6 cut(s)	126, 473, 474, 540, 556, 631
BssMI	GATC	4 cut(s)	151, 355, 378, 495
BssT1I	CCWWGG	4 cut(s)	126, 540, 556, 631
Bst2UI	CCWGG	1 cut(s)	193
Bst4CI	ACNGT	2 cut(s)	90, 189
Bst6I	CTCTTC	1 cut(s)	247
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	3 cut(s)	72, 156, 375
BstKTI	GATC	4 cut(s)	154, 358, 381, 498
BstMBI	GATC	4 cut(s)	151, 355, 378, 495
BstNI	CCWGG	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	553
BstPAI	GACNNNNGTC	1 cut(s)	542
BstSCI	CCNGG	3 cut(s)	191, 473, 474
BstSLI	GKGCMC	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	355
BstXI	CCANNNNNNTGG	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	139
Cfr13I	GGNCC	4 cut(s)	537, 544, 619, 635
Cfr9I	CCCGGG	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	6, 91
CviAII	CATG	2 cut(s)	259, 550
CviJI	RGCY	3 cut(s)	54, 221, 292
CviKI_1	RGCY	3 cut(s)	54, 221, 292
CviQI	GTAC	2 cut(s)	6, 91
DdeI	CTNAG	3 cut(s)	72, 156, 375
DpnI	GATC	4 cut(s)	153, 357, 380, 497
DpnII	GATC	4 cut(s)	151, 355, 378, 495
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
EciI	GGCGGA	1 cut(s)	302
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	4 cut(s)	126, 540, 556, 631
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	4 cut(s)	537, 544, 619, 635
Eco53kI	GAGCTC	1 cut(s)	292
Eco88I	CYCGRG	1 cut(s)	474
EcoICRI	GAGCTC	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	191
EcoT14I	CCWWGG	4 cut(s)	126, 540, 556, 631
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	4 cut(s)	126, 540, 556, 631
FaeI	CATG	2 cut(s)	262, 553
FaqI	GGGAC	2 cut(s)	345, 423
FatI	CATG	2 cut(s)	258, 549
FauI	CCCGC	6 cut(s)	275, 313, 375, 385, 442, 519
Fnu4HI	GCNGC	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	116
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	1 cut(s)	214
HapII	CCGG	1 cut(s)	475
Hin1II	CATG	2 cut(s)	262, 553
HinfI	GANTC	1 cut(s)	417
HpaII	CCGG	1 cut(s)	475
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	2 cut(s)	547, 622
Hpy8I	GTNNAC	2 cut(s)	547, 622
HpyAV	CCTTC	3 cut(s)	156, 184, 240
HpyCH4III	ACNGT	2 cut(s)	90, 189
HpyCH4V	TGCA	5 cut(s)	64, 105, 118, 213, 553
HpyF3I	CTNAG	3 cut(s)	72, 156, 375
Hsp92II	CATG	2 cut(s)	262, 553
Kzo9I	GATC	4 cut(s)	151, 355, 378, 495
LmnI	GCTCC	4 cut(s)	146, 195, 289, 297
LpnPI	CCDG	6 cut(s)	6, 50, 178, 205, 292, 488
Lsp1109I	GCAGC	1 cut(s)	102
MalI	GATC	4 cut(s)	153, 357, 380, 497
MboI	GATC	4 cut(s)	151, 355, 378, 495
MboII	GAAGA	4 cut(s)	59, 96, 234, 475
MfeI	CAATTG	1 cut(s)	106
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	2 cut(s)	71, 294
MluCI	AATT	4 cut(s)	106, 236, 324, 466
MnlI	CCTC	3 cut(s)	165, 265, 613
MslI	CAYNNNNRTG	2 cut(s)	263, 586
MspA1I	CMGCKG	1 cut(s)	282
MspI	CCGG	1 cut(s)	475
MspR9I	CCNGG	3 cut(s)	193, 475, 476
MunI	CAATTG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	193
NciI	CCSGG	2 cut(s)	475, 476
NdeII	GATC	4 cut(s)	151, 355, 378, 495
NlaIII	CATG	2 cut(s)	262, 553
NlaIV	GGNNCC	1 cut(s)	357
NspI	RCATGY	1 cut(s)	553
PfeI	GAWTC	1 cut(s)	417
PfoI	TCCNGGA	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	117
PshAI	GACNNNNGTC	1 cut(s)	542
Psp124BI	GAGCTC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	191
PspN4I	GGNNCC	1 cut(s)	357
PspPI	GGNCC	4 cut(s)	537, 544, 619, 635
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	2 cut(s)	7, 92
RsaNI	GTAC	2 cut(s)	6, 91
RseI	CAYNNNNRTG	2 cut(s)	263, 586
SacI	GAGCTC	1 cut(s)	294
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	4 cut(s)	151, 355, 378, 495
Sau96I	GGNCC	4 cut(s)	537, 544, 619, 635
ScrFI	CCNGG	3 cut(s)	193, 475, 476
SduI	GDGCHC	2 cut(s)	71, 294
SetI	ASST	5 cut(s)	11, 294, 546, 627, 633
SinI	GGWCC	4 cut(s)	537, 544, 619, 635
SmaI	CCCGGG	1 cut(s)	476
SmiMI	CAYNNNNRTG	2 cut(s)	263, 586
Sse9I	AATT	4 cut(s)	106, 236, 324, 466
SsiI	CCGC	8 cut(s)	262, 282, 287, 306, 368, 392, 449, 512
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	191, 473, 474
StyI	CCWWGG	4 cut(s)	126, 540, 556, 631
TaaI	ACNGT	2 cut(s)	90, 189
TasI	AATT	4 cut(s)	106, 236, 324, 466
TfiI	GAWTC	1 cut(s)	417
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	234
TspGWI	ACGGA	1 cut(s)	427
TspMI	CCCGGG	1 cut(s)	474
TspRI	CASTG	1 cut(s)	76
VpaK11BI	GGWCC	4 cut(s)	537, 544, 619, 635
XapI	RAATTY	2 cut(s)	236, 324
XceI	RCATGY	1 cut(s)	553
XcmI	CCANNNNNNNNNTGG	2 cut(s)	613, 629
XmaI	CCCGGG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.