Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001210

Physical Location & Seq

Genomic Coordinates Forward (+)

21400921 .. 21401691

Gene Structure 771 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G254500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCCACTGGAATAGCTGCCATGATGCTTCGAAGTGTTATTGAAGTAAGTATATCAATACATGATTTGGAGATTGAGCATAGGCCATACCATCGCAATTGCAGTTGTGCACTGCACAAGTTGAAGAGTATTTGCTCCAATGCTTGCCCTCCTCAACAAAGGAATATTTCATTCCCCAAGAAAAAGCCTCCGTCTTCTAAGCGGCTCATCACTATACAGGCCAGGCATGGGGTTAGAGGTTCAACTCCTACACAGACAAAGACAAAGGAGGATTTGGGGGATGGTGGGGAGGTATATGTTTCACCAAGCACCTACTCTACACACACAAATAGACACGTAGATGATGCAGGGTTCATAGATCCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.45

Weight (kDa)

9.21

Isoelectric Point (pI)

59.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001210)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01620 FvH4_1g01630 FvH4_1g01640 FvH4_1g01650 FvH4_1g01670 FvH4_1g01700
malus_domestica	MD15G1158700.v1.1 MD15G1158800.v1.1 MD15G1158900.v1.1 MD15G1159000.v1.1 MD15G1159200.v1.1 MD15G1159300.v1.1 MD15G1159500.v1.1
prunus_persica	Prupe.1G525100_v2.0.a1 Prupe.7G253900_v2.0.a1 Prupe.7G254000_v2.0.a1 Prupe.7G254100_v2.0.a1 Prupe.7G254200_v2.0.a1 Prupe.7G254300_v2.0.a1 Prupe.7G254400_v2.0.a1 Prupe.7G254500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086491 RchiOBHm_Chr2g0086581 RchiOBHm_Chr2g0086591 RchiOBHm_Chr2g0086601 RchiOBHm_Chr2g0086611 RchiOBHm_Chr2g0086641 RchiOBHm_Chr4g0393981
rosa_laevigata	RLG00000015769
rosa_multiflora	Rmu_ssc0000449.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154360 Rroxscaffold_2G00154380 Rroxscaffold_2G00154390 Rroxscaffold_2G00154400 Rroxscaffold_2G00154410 Rroxscaffold_2G00154420
rosa_samantha	Rh2AG019000 Rh2AG019100 Rh2AG019200 Rh2AG019300 Rh2AG019600 Rh2AG019700 Rh2BG018600 Rh2BG018700 Rh2BG018800 Rh2BG018900 Rh2BG019100 Rh2BG019200 Rh2BG019300 Rh2BG019400 Rh2BG019500 Rh2BG019600
rosa_wichuraiana	Rw2G001600 Rw2G001610 Rw2G001620 Rw2G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	202
AclWI	GGATC	1 cut(s)	353
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	1 cut(s)	228
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	3 cut(s)	44, 124, 243
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	2 cut(s)	17, 366
AluI	AGCT	2 cut(s)	17, 366
Alw21I	GWGCWC	1 cut(s)	112
Alw44I	GTGCAC	1 cut(s)	108
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	3 cut(s)	3, 83, 219
ApaLI	GTGCAC	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	294
AsuII	TTCGAA	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	112
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	2 cut(s)	99, 275
BciT130I	CCWGG	1 cut(s)	223
BfaI	CTAG	1 cut(s)	363
BisI	GCNGC	2 cut(s)	18, 203
BlsI	GCNGC	2 cut(s)	19, 204
Bme1390I	CCNGG	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	2 cut(s)	15, 334
BpiI	GAAGAC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	223
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	13
BseRI	GAGGAG	1 cut(s)	141
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	4
BsgI	GTGCAG	1 cut(s)	98
BshFI	GGCC	3 cut(s)	5, 85, 221
BsiHKAI	GWGCWC	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	228
BsnI	GGCC	3 cut(s)	5, 85, 221
Bsp119I	TTCGAA	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	3 cut(s)	5, 85, 221
BspPI	GGATC	1 cut(s)	353
BspT104I	TTCGAA	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	13
BssMI	GATC	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	119
BstBAI	YACGTR	1 cut(s)	337
BstBI	TTCGAA	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	358
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	4
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BsuRI	GGCC	3 cut(s)	5, 85, 221
BtgZI	GCGATG	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	286
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	2 cut(s)	6, 110
Cac8I	GCNNGC	1 cut(s)	145
CviAII	CATG	3 cut(s)	22, 62, 227
CviJI	RGCY	7 cut(s)	5, 17, 85, 187, 205, 221, 366
CviKI_1	RGCY	7 cut(s)	5, 17, 85, 187, 205, 221, 366
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	221
FaeI	CATG	3 cut(s)	25, 65, 230
FatI	CATG	3 cut(s)	21, 61, 226
Fnu4HI	GCNGC	2 cut(s)	18, 203
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	2 cut(s)	18, 203
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	2 cut(s)	18, 203
HaeIII	GGCC	3 cut(s)	5, 85, 221
Hin1II	CATG	3 cut(s)	25, 65, 230
HphI	GGTGA	1 cut(s)	294
Hpy166II	GTNNAC	1 cut(s)	110
Hpy8I	GTNNAC	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	4 cut(s)	102, 110, 115, 347
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	25, 65, 230
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	4 cut(s)	203, 208, 235, 333
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	2 cut(s)	15, 334
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	336
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	2 cut(s)	136, 186
MfeI	CAATTG	1 cut(s)	97
MflI	RGATCY	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	112
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	97
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	159, 162, 198, 230, 262, 283
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	223
MunI	CAATTG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	223
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	3 cut(s)	25, 65, 230
NspV	TTCGAA	1 cut(s)	31
PkrI	GCNGC	2 cut(s)	19, 204
Ppu21I	YACGTR	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	339
SatI	GCNGC	2 cut(s)	18, 203
Sau3AI	GATC	1 cut(s)	358
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	6 cut(s)	19, 241, 294, 314, 339, 368
SfaNI	GCATC	2 cut(s)	15, 334
SfuI	TTCGAA	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	1 cut(s)	97
SsiI	CCGC	1 cut(s)	202
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	221
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	97
TauI	GCSGC	1 cut(s)	205
TscAI	CASTG	2 cut(s)	13, 117
TseI	GCWGC	1 cut(s)	17
TspDTI	ATGAA	2 cut(s)	159, 343
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	13, 117
VneI	GTGCAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.