MD15G1158700.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
11792341 .. 11792649
309 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1158700.v1.1.491

Sequence Viewer

Length: 309 bp
ATGTCAAGCACCGGAGTTGCTGGATTGATGTTTCAGTGTGTGTTTGAAGGAAGTCTGTCAATGCAGGATTCTGAAATTGAGCGAAGGCCGTACCATAAGAACTGCAGTTGTGCTCTTCACTCCAATGTTGGTGTTTGCTCCAATGCATGTCAAAGGAACATTTTCCTCCCAAAGAAACACTCGTGGAGCGATATTGGTTCCTTGTGCATGCAGGCATCATCAACTTCTAAATTCTCTTCTCCTCTCGTTTGTGACATGTGCATGTCCACTTTGCACCGGAAACAGAGAAATTCTCAATGTGGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.22

Weight (kDa)

8.65

Isoelectric Point (pI)

73.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 230, 289
AfaI GTAC 1 cut(s) 92
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 1 cut(s) 47
Alw21I GWGCWC 1 cut(s) 115
AoxI GGCC 1 cut(s) 86
ApoI RAATTY 2 cut(s) 230, 289
Asp700I GAANNNNTTC 1 cut(s) 161
BauI CACGAG 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 115
BceAI ACGGC 1 cut(s) 73
BfmI CTRYAG 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 1 cut(s) 224
BplI GAGNNNNNCTC 2 cut(s) 277, 309
BsaWI WCCGGW 2 cut(s) 11, 276
BseRI GAGGAG 1 cut(s) 231
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 2 cut(s) 12, 277
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 115
BspANI GGCC 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 199
BspMAI CTGCAG 1 cut(s) 107
BspQI GCTCTTC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 181
Bst2BI CACGAG 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 120, 241
BstC8I GCNNGC 2 cut(s) 209, 213
BstNSI RCATGY 4 cut(s) 150, 211, 259, 265
BstSFI CTRYAG 1 cut(s) 103
BsuRI GGCC 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 2 cut(s) 209, 213
Csp6I GTAC 1 cut(s) 91
CviAII CATG 4 cut(s) 147, 208, 256, 262
CviJI RGCY 1 cut(s) 88
CviKI_1 RGCY 1 cut(s) 88
CviQI GTAC 1 cut(s) 91
Eam1104I CTCTTC 2 cut(s) 120, 241
EarI CTCTTC 2 cut(s) 120, 241
EcoT22I ATGCAT 1 cut(s) 148
FaeI CATG 4 cut(s) 150, 211, 259, 265
FaiI YATR 6 cut(s) 96, 148, 209, 257, 263, 307
FatI CATG 4 cut(s) 146, 207, 255, 261
HaeIII GGCC 1 cut(s) 88
HapII CCGG 2 cut(s) 12, 277
Hin1II CATG 4 cut(s) 150, 211, 259, 265
HinfI GANTC 1 cut(s) 68
HpaII CCGG 2 cut(s) 12, 277
Hpy166II GTNNAC 1 cut(s) 267
Hpy188I TCNGA 1 cut(s) 73
Hpy8I GTNNAC 1 cut(s) 267
HpyAV CCTTC 2 cut(s) 41, 78
HpyCH4V TGCA 7 cut(s) 64, 105, 146, 207, 211, 261, 274
Hsp92II CATG 4 cut(s) 150, 211, 259, 265
LguI GCTCTTC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 143, 186
LpnPI CCDG 5 cut(s) 6, 25, 50, 197, 290
LweI GCATC 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 251
MboII GAAGA 2 cut(s) 107, 228
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 3 cut(s) 75, 230, 289
MnlI CCTC 2 cut(s) 176, 252
Mph1103I ATGCAT 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 161
MslI CAYNNNNRTG 2 cut(s) 123, 260
MspI CCGG 2 cut(s) 12, 277
NlaIII CATG 4 cut(s) 150, 211, 259, 265
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 251
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 4 cut(s) 150, 211, 259, 265
PaeI GCATGC 1 cut(s) 211
PciI ACATGT 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 68
PscI ACATGT 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 199
PstI CTGCAG 1 cut(s) 107
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 2 cut(s) 123, 260
SapI GCTCTTC 1 cut(s) 120
SduI GDGCHC 1 cut(s) 115
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 103
SmiMI CAYNNNNRTG 2 cut(s) 123, 260
SphI GCATGC 1 cut(s) 211
Sse9I AATT 3 cut(s) 75, 230, 289
TasI AATT 3 cut(s) 75, 230, 289
TfiI GAWTC 1 cut(s) 68
TscAI CASTG 1 cut(s) 41
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 294
TspRI CASTG 1 cut(s) 41
XapI RAATTY 2 cut(s) 230, 289
XceI RCATGY 4 cut(s) 150, 211, 259, 265
XmnI GAANNNNTTC 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.