Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001210

Physical Location & Seq

Genomic Coordinates Forward (+)

11919442 .. 11919771

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1159500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTCTAGCGCAGCAGTTGCCGGGATTATGTTTCAGTGTGTGTTTGAAGGAAGCCTTTCAATGCAGGACACAGAGATTGAGCGAAGGCCTTACCATAAAAACTCCAGCTGCGCTCTACACTCCAAGGCCGGTGTTTGCTCCAATGCTTGTCAAAGGAACATTTCCTTTCCCAAGAAACAGTCGTGGAGCGATCGTTTCCTGTGCATGCAAGCATCAGCAACTTCCAAATTTTCTTCTCCTCTTGTTGGAGACTTGTCCACATCCACATCCACCAGAAACAGCGACATTGTGACTGGGGTTCATAATCCGGCCTTGCCACATAGGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

110

Amino Acids

11.88

Weight (kDa)

9.23

Isoelectric Point (pI)

68.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001210)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01620 FvH4_1g01630 FvH4_1g01640 FvH4_1g01650 FvH4_1g01670 FvH4_1g01700
malus_domestica	MD15G1158700.v1.1 MD15G1158800.v1.1 MD15G1158900.v1.1 MD15G1159000.v1.1 MD15G1159200.v1.1 MD15G1159300.v1.1 MD15G1159500.v1.1
prunus_persica	Prupe.1G525100_v2.0.a1 Prupe.7G253900_v2.0.a1 Prupe.7G254000_v2.0.a1 Prupe.7G254100_v2.0.a1 Prupe.7G254200_v2.0.a1 Prupe.7G254300_v2.0.a1 Prupe.7G254400_v2.0.a1 Prupe.7G254500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086491 RchiOBHm_Chr2g0086581 RchiOBHm_Chr2g0086591 RchiOBHm_Chr2g0086601 RchiOBHm_Chr2g0086611 RchiOBHm_Chr2g0086641 RchiOBHm_Chr4g0393981
rosa_laevigata	RLG00000015769
rosa_multiflora	Rmu_ssc0000449.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154360 Rroxscaffold_2G00154380 Rroxscaffold_2G00154390 Rroxscaffold_2G00154400 Rroxscaffold_2G00154410 Rroxscaffold_2G00154420
rosa_samantha	Rh2AG019000 Rh2AG019100 Rh2AG019200 Rh2AG019300 Rh2AG019600 Rh2AG019700 Rh2BG018600 Rh2BG018700 Rh2BG018800 Rh2BG018900 Rh2BG019100 Rh2BG019200 Rh2BG019300 Rh2BG019400 Rh2BG019500 Rh2BG019600
rosa_wichuraiana	Rw2G001600 Rw2G001610 Rw2G001620 Rw2G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	47, 60
AluBI	AGCT	1 cut(s)	108
AluI	AGCT	1 cut(s)	108
Alw26I	GTCTC	1 cut(s)	243
AoxI	GGCC	3 cut(s)	86, 126, 309
ApeKI	GCWGC	2 cut(s)	11, 108
ApoI	RAATTY	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	55
AspLEI	GCGC	2 cut(s)	11, 113
AsuC2I	CCSGG	1 cut(s)	22
BbvI	GCAGC	2 cut(s)	23, 95
BcnI	CCSGG	1 cut(s)	22
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	1 cut(s)	6
BglI	GCCNNNNNGGC	1 cut(s)	322
BisI	GCNGC	2 cut(s)	12, 109
BlsI	GCNGC	2 cut(s)	13, 110
Bme1390I	CCNGG	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	22
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	221
BmuI	ACTGGG	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	22
BsaJI	CCNNGG	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	123
BseGI	GGATG	2 cut(s)	260, 266
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	228
BseXI	GCAGC	2 cut(s)	23, 95
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	3 cut(s)	88, 128, 311
BsiEI	CGRYCG	1 cut(s)	193
BsiSI	CCGG	3 cut(s)	21, 129, 308
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmAI	GTCTC	1 cut(s)	243
BsnI	GGCC	3 cut(s)	88, 128, 311
Bsp143I	GATC	1 cut(s)	190
BspANI	GGCC	3 cut(s)	88, 128, 311
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	298
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	123
BssMI	GATC	1 cut(s)	190
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	180
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstC8I	GCNNGC	2 cut(s)	206, 210
BstF5I	GGATG	2 cut(s)	260, 266
BstHHI	GCGC	2 cut(s)	11, 113
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	1 cut(s)	190
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 322
BstNSI	RCATGY	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	23, 95
BsuRI	GGCC	3 cut(s)	88, 128, 311
BtsCI	GGATG	2 cut(s)	260, 266
BtsIMutI	CAGTG	1 cut(s)	41
Cac8I	GCNNGC	2 cut(s)	206, 210
CfoI	GCGC	2 cut(s)	11, 113
Cfr10I	RCCGGY	1 cut(s)	128
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	5 cut(s)	54, 88, 108, 128, 311
CviKI_1	RGCY	5 cut(s)	54, 88, 108, 128, 311
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eco130I	CCWWGG	1 cut(s)	123
Eco147I	AGGCCT	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	208
FaiI	YATR	5 cut(s)	29, 96, 206, 303, 321
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	12, 109
FokI	GGATG	2 cut(s)	247, 253
Fsp4HI	GCNGC	2 cut(s)	12, 109
FspBI	CTAG	1 cut(s)	6
GlaI	GCGC	2 cut(s)	10, 112
GluI	GCNGC	2 cut(s)	12, 109
GsuI	CTGGAG	1 cut(s)	88
HaeIII	GGCC	3 cut(s)	88, 128, 311
HapII	CCGG	3 cut(s)	21, 129, 308
HhaI	GCGC	2 cut(s)	11, 113
Hin1II	CATG	1 cut(s)	208
Hin6I	GCGC	2 cut(s)	9, 111
HinP1I	GCGC	2 cut(s)	9, 111
HpaII	CCGG	3 cut(s)	21, 129, 308
Hpy166II	GTNNAC	1 cut(s)	258
Hpy8I	GTNNAC	1 cut(s)	258
HpyAV	CCTTC	2 cut(s)	41, 78
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4V	TGCA	3 cut(s)	64, 204, 208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 322
Hsp92II	CATG	1 cut(s)	208
HspAI	GCGC	2 cut(s)	9, 111
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	2 cut(s)	143, 186
LpnPI	CCDG	8 cut(s)	34, 50, 118, 142, 212, 279, 286, 321
Lsp1109I	GCAGC	2 cut(s)	23, 95
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	225
MluCI	AATT	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	55
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	3 cut(s)	21, 129, 308
MspR9I	CCNGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	2 cut(s)	17, 322
NciI	CCSGG	1 cut(s)	22
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	1 cut(s)	208
PaeI	GCATGC	1 cut(s)	208
PceI	AGGCCT	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	13, 110
Ple19I	CGATCG	1 cut(s)	193
PvuI	CGATCG	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	108
SatI	GCNGC	2 cut(s)	12, 109
Sau3AI	GATC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	1 cut(s)	110
SfaNI	GCATC	1 cut(s)	221
SphI	GCATGC	1 cut(s)	208
Sse9I	AATT	1 cut(s)	227
SseBI	AGGCCT	1 cut(s)	88
SspMI	CTAG	1 cut(s)	6
StuI	AGGCCT	1 cut(s)	88
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	180
TasI	AATT	1 cut(s)	227
TscAI	CASTG	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	2 cut(s)	11, 108
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	1 cut(s)	290
TspRI	CASTG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	227
XceI	RCATGY	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	55
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.