Rh2BG019500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001210
Physical Location & Seq
Forward (+)
1395243 .. 1395521
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG019500.1

Sequence Viewer

Length: 279 bp
ATGGCTACTTTGGGGATTTCTGGTATGATGTTTCAGTGTGTGTTTGAAGGAAGTCTATCTATGCAGGACACCGAAATTGAGCGACGGCCATACCATAAGAACTGCAATTGTGCGCTGCACAGGTCCATGGGTGATGCTTGCTCCAATGCTTGTCCTCAACAAAGGAACATTTCCTCCCCCAAGAAACAGTCATGGGCCGACAGTTCCTTATGCATTGCAATAGCTTCAAAGTTCTCTTCTCAGCATTCCTTTCTGGCCAACACATCCACGTCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.08

Weight (kDa)

8.28

Isoelectric Point (pI)

74.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 86, 255
AgsI TTSAA 2 cut(s) 47, 228
AjiI CACGTC 1 cut(s) 270
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AoxI GGCC 3 cut(s) 86, 195, 255
ApeKI GCWGC 1 cut(s) 115
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 123, 195
AsuHPI GGTGA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 123
BalI TGGCCA 1 cut(s) 257
BbvI GCAGC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 101
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 123
BmgBI CACGTC 1 cut(s) 270
BmgT120I GGNCC 2 cut(s) 123, 195
BmsI GCATC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 158, 188
Bse3DI GCAATG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 3 cut(s) 88, 197, 257
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 3 cut(s) 88, 197, 257
Bsp19I CCATGG 1 cut(s) 126
BspANI GGCC 3 cut(s) 88, 197, 257
BspCNI CTCAG 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 189, 203
Bst6I CTCTTC 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 263
BstHHI GCGC 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 3 cut(s) 88, 197, 257
BtgI CCRYGG 1 cut(s) 126
BtrI CACGTC 1 cut(s) 270
BtsCI GGATG 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 139
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 123, 195
CviAII CATG 2 cut(s) 127, 192
CviJI RGCY 5 cut(s) 5, 88, 197, 224, 257
CviKI_1 RGCY 5 cut(s) 5, 88, 197, 224, 257
DdeI CTNAG 1 cut(s) 240
EaeI YGGCCR 2 cut(s) 86, 255
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 130, 195
FaiI YATR 7 cut(s) 26, 62, 91, 96, 128, 193, 211
FatI CATG 2 cut(s) 126, 191
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 116
GlaI GCGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 116
HaeIII GGCC 3 cut(s) 88, 197, 257
HhaI GCGC 1 cut(s) 115
Hin1II CATG 2 cut(s) 130, 195
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HphI GGTGA 1 cut(s) 143
Hpy99I CGWCG 1 cut(s) 87
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 2 cut(s) 189, 203
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 5 cut(s) 64, 105, 118, 213, 218
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 269
Hsp92II CATG 2 cut(s) 130, 195
HspAI GCGC 1 cut(s) 113
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 6, 50, 106, 239
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 124
MaeII ACGT 1 cut(s) 269
MboII GAAGA 1 cut(s) 228
MfeI CAATTG 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 2 cut(s) 75, 106
MluNI TGGCCA 1 cut(s) 257
MnlI CCTC 2 cut(s) 165, 184
Mox20I TGGCCA 1 cut(s) 257
Mph1103I ATGCAT 1 cut(s) 215
MscI TGGCCA 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 257
MunI CAATTG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 244
NcoI CCATGG 1 cut(s) 126
NlaIII CATG 2 cut(s) 130, 195
NsiI ATGCAT 1 cut(s) 215
PctI GAATGC 1 cut(s) 244
PkrI GCNGC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 123, 195
SatI GCNGC 1 cut(s) 116
Sau96I GGNCC 2 cut(s) 123, 195
SetI ASST 3 cut(s) 125, 226, 272
SfaNI GCATC 1 cut(s) 124
SgeI CNNG 9 cut(s) 33, 77, 133, 139, 150, 162, 193, 204, 266
SinI GGWCC 1 cut(s) 123
Sse9I AATT 2 cut(s) 75, 106
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 189, 203
TaiI ACGT 1 cut(s) 272
TasI AATT 2 cut(s) 75, 106
TscAI CASTG 1 cut(s) 41
TseI GCWGC 1 cut(s) 115
TspRI CASTG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 123
Zsp2I ATGCAT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.