Rroxscaffold_2G00154380

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
90975735 .. 90976064
330 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00154380.1

Sequence Viewer

Length: 330 bp
ATGACTACCTTGGGAGTTTCCGGTTTAATGTTTCAGTGTGTATTTGAAGGAAGCCTGTCAATGAAGGACACAGAAATTGAGAGAAGGCCATACCATAAAAACTGCAACTGTGCACTACACAAGTCCAAGGGCGGTGCTTGCTCGAATTCTTGTTCTCAGCAAAGGAGCATTTCGTTCCCCACGAAAAAGTCATGGACAGATAGCTCCTGGTGCTTAGCCACAGATTCTTCAGCTTCTAAGCATTTTGTTCCCAGCTACACGTTTACATCCACCAATGAGAGCAGAGAAGGCGTGGATGCGGTAATTCATTGCTTGTCCCAGAGCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.0

Weight (kDa)

8.19

Isoelectric Point (pI)

63.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 132, 299
AcsI RAATTY 1 cut(s) 145
AcuI CTGAAG 1 cut(s) 213
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 3 cut(s) 204, 233, 255
AluI AGCT 3 cut(s) 204, 233, 255
Alw21I GWGCWC 1 cut(s) 115
Alw44I GTGCAC 1 cut(s) 111
AoxI GGCC 1 cut(s) 86
ApaLI GTGCAC 1 cut(s) 111
ApoI RAATTY 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 208
BlpI GCTNAGC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 286
Bpu1102I GCTNAGC 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 9, 126
BsaWI WCCGGW 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 9, 126
BseGI GGATG 2 cut(s) 266, 301
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 115
BseYI CCCAGC 1 cut(s) 251
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 115
Bsp1720I GCTNAGC 1 cut(s) 214
BspACI CCGC 2 cut(s) 132, 299
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 307
BssECI CCNNGG 2 cut(s) 9, 126
BssT1I CCWWGG 2 cut(s) 9, 126
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 3 cut(s) 156, 214, 237
BstF5I GGATG 2 cut(s) 266, 301
BstMWI GCNNNNNNNGC 3 cut(s) 138, 210, 288
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstSLI GKGCMC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 266, 301
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 139
CviAII CATG 1 cut(s) 192
CviJI RGCY 7 cut(s) 54, 88, 204, 218, 233, 255, 324
CviKI_1 RGCY 7 cut(s) 54, 88, 204, 218, 233, 255, 324
DdeI CTNAG 3 cut(s) 156, 214, 237
Eco130I CCWWGG 2 cut(s) 9, 126
Eco57I CTGAAG 1 cut(s) 213
EcoRI GAATTC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 2 cut(s) 9, 126
ErhI CCWWGG 2 cut(s) 9, 126
FaeI CATG 1 cut(s) 195
FaiI YATR 3 cut(s) 91, 96, 193
FaqI GGGAC 1 cut(s) 301
FatI CATG 1 cut(s) 191
FokI GGATG 2 cut(s) 253, 308
GsaI CCCAGC 1 cut(s) 255
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 21
Hin1II CATG 1 cut(s) 195
HinfI GANTC 1 cut(s) 224
HpaII CCGG 1 cut(s) 21
Hpy166II GTNNAC 2 cut(s) 113, 264
Hpy8I GTNNAC 2 cut(s) 113, 264
HpyAV CCTTC 4 cut(s) 41, 58, 78, 281
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 260
HpyCH4V TGCA 2 cut(s) 105, 113
HpyF10VI GCNNNNNNNGC 3 cut(s) 138, 210, 288
HpyF3I CTNAG 3 cut(s) 156, 214, 237
HpySE526I ACGT 1 cut(s) 260
Hsp92II CATG 1 cut(s) 195
LmnI GCTCC 2 cut(s) 165, 209
LpnPI CCDG 5 cut(s) 34, 68, 193, 220, 265
LweI GCATC 1 cut(s) 286
MaeII ACGT 1 cut(s) 260
MboII GAAGA 1 cut(s) 219
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 3 cut(s) 75, 145, 303
MseI TTAA 1 cut(s) 26
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 3 cut(s) 138, 210, 288
NlaIII CATG 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PfeI GAWTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 251
PspGI CCWGG 1 cut(s) 206
SaqAI TTAA 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 115
SetI ASST 5 cut(s) 11, 206, 235, 257, 263
SfaNI GCATC 1 cut(s) 286
Sse9I AATT 3 cut(s) 75, 145, 303
SsiI CCGC 2 cut(s) 132, 299
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 2 cut(s) 9, 126
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 263
TaqI TCGA 1 cut(s) 143
TasI AATT 3 cut(s) 75, 145, 303
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TscAI CASTG 1 cut(s) 41
TspDTI ATGAA 2 cut(s) 77, 296
TspRI CASTG 1 cut(s) 41
VneI GTGCAC 1 cut(s) 111
XapI RAATTY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.