MD15G1159300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0001210
Physical Location & Seq
Forward (+)
11905631 .. 11905915
285 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1159300.v1.1.491

Sequence Viewer

Length: 285 bp
ATGTCTAGCGCAGCAGTTGCCGGGATGATGTTTCAGTGTGTGTTCGAAGGAAGCCTTTCAATGCAAGATACAGAGATTGAGCGAAGGCCATATCATAAGAACTGCAATTGCGCTCTGCACTCCAAGGTTGGTGTTTGCTCCAATGCATGTCAAAGGAACATCTCATTCCCAAAGAAGCAGTCATGGAGTGATAGTTCCTTACGCATGCAGGGGTTAGCTACTTCAAATTCTCTTCTCCTCTCGCTGGTAACATTTCCACATCTACTGAAAAAAGAAAGAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.47

Weight (kDa)

9.2

Isoelectric Point (pI)

58.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 226
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 2 cut(s) 60, 225
AloI GAACNNNNNNTCC 2 cut(s) 178, 210
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 226
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
Asp700I GAANNNNTTC 1 cut(s) 55
AspLEI GCGC 2 cut(s) 11, 113
AsuC2I CCSGG 1 cut(s) 22
AsuII TTCGAA 1 cut(s) 45
BbvI GCAGC 1 cut(s) 23
BcnI CCSGG 1 cut(s) 22
BfaI CTAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 1 cut(s) 244
BsnI GGCC 1 cut(s) 88
Bsp119I TTCGAA 1 cut(s) 45
BspANI GGCC 1 cut(s) 88
BspT104I TTCGAA 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 123
Bst6I CTCTTC 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 206
BstF5I GGATG 1 cut(s) 30
BstHHI GCGC 2 cut(s) 11, 113
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNSI RCATGY 2 cut(s) 150, 208
BstSCI CCNGG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 23
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 206
CfoI GCGC 2 cut(s) 11, 113
CviAII CATG 3 cut(s) 147, 183, 205
CviJI RGCY 3 cut(s) 54, 88, 218
CviKI_1 RGCY 3 cut(s) 54, 88, 218
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 3 cut(s) 150, 186, 208
FaiI YATR 5 cut(s) 91, 96, 148, 184, 206
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 3 cut(s) 146, 182, 204
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 6
GlaI GCGC 2 cut(s) 10, 112
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 21
HhaI GCGC 2 cut(s) 11, 113
Hin1II CATG 3 cut(s) 150, 186, 208
Hin6I GCGC 2 cut(s) 9, 111
HinP1I GCGC 2 cut(s) 9, 111
HinfI GANTC 1 cut(s) 279
HpaII CCGG 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 41, 78
HpyCH4V TGCA 5 cut(s) 64, 105, 118, 146, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
Hsp92II CATG 3 cut(s) 150, 186, 208
HspAI GCGC 2 cut(s) 9, 111
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 3 cut(s) 34, 194, 230
Lsp1109I GCAGC 1 cut(s) 23
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 247
MboII GAAGA 1 cut(s) 224
MfeI CAATTG 1 cut(s) 106
MluCI AATT 2 cut(s) 106, 226
MnlI CCTC 1 cut(s) 248
Mph1103I ATGCAT 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 55
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 22
MunI CAATTG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 17
NciI CCSGG 1 cut(s) 22
NlaIII CATG 3 cut(s) 150, 186, 208
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 2 cut(s) 150, 208
NspV TTCGAA 1 cut(s) 45
PaeI GCATGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 55
PkrI GCNGC 1 cut(s) 13
SatI GCNGC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 22
SetI ASST 2 cut(s) 129, 220
SfuI TTCGAA 1 cut(s) 45
SphI GCATGC 1 cut(s) 208
Sse9I AATT 2 cut(s) 106, 226
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 20
StyI CCWWGG 1 cut(s) 123
TaqI TCGA 1 cut(s) 45
TasI AATT 2 cut(s) 106, 226
TscAI CASTG 1 cut(s) 41
TseI GCWGC 1 cut(s) 11
TspRI CASTG 1 cut(s) 41
XapI RAATTY 1 cut(s) 226
XceI RCATGY 2 cut(s) 150, 208
XmnI GAANNNNTTC 1 cut(s) 55
XspI CTAG 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.