FvH4_1g01630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001210
Physical Location & Seq
Forward (+)
871330 .. 871596
267 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01630.t1

Sequence Viewer

Length: 267 bp
ATGAATACCTTGGGAGCATCTGGGATGATGTTTCAGTGTGTGCTTGAAGGTAGCATATCAATGCATGACACTGTAATTGAGCGAAGGCCATACCACAAGAATTGCAATTGTGCGCTACACAAGTCCAAAGGGGGTGTTTGCTCCAATGCTTGCTCTCAACAAAGAACCATTTCTTTCCCAAAGAAGCAATCCTGGACGGATGGCACATTGTCCATGTCAGCAGCAACTTCCAAATTGTGTTTACAGCATTCTCTTCCCGGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.55

Weight (kDa)

9.08

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 191
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 221
Asp700I GAANNNNTTC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 258
BbvI GCAGC 1 cut(s) 233
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 193
BcnI CCSGG 1 cut(s) 258
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 2 cut(s) 193, 258
BmrFI CCNGG 2 cut(s) 193, 258
BmsI GCATC 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 9
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 30, 205
BseXI GCAGC 1 cut(s) 233
BshFI GGCC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 258
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 1 cut(s) 88
BspANI GGCC 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 151
BstF5I GGATG 2 cut(s) 30, 205
BstHHI GCGC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 191, 256
BstV1I GCAGC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 30, 205
BtsIMutI CAGTG 2 cut(s) 41, 69
Cac8I GCNNGC 1 cut(s) 151
CfoI GCGC 1 cut(s) 115
CspCI CAANNNNNGTGG 2 cut(s) 83, 118
CviAII CATG 2 cut(s) 65, 214
CviJI RGCY 1 cut(s) 88
CviKI_1 RGCY 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 68, 217
FaiI YATR 4 cut(s) 56, 66, 91, 215
FatI CATG 2 cut(s) 64, 213
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 2 cut(s) 37, 212
Fsp4HI GCNGC 1 cut(s) 222
GlaI GCGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 222
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 115
Hin1II CATG 2 cut(s) 68, 217
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 2 cut(s) 41, 78
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 64, 105
Hsp92II CATG 2 cut(s) 68, 217
HspAI GCGC 1 cut(s) 113
LmnI GCTCC 2 cut(s) 14, 146
LpnPI CCDG 3 cut(s) 6, 178, 205
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 1 cut(s) 26
MboII GAAGA 1 cut(s) 245
MfeI CAATTG 1 cut(s) 106
MluCI AATT 4 cut(s) 75, 100, 106, 233
Mph1103I ATGCAT 1 cut(s) 66
MroXI GAANNNNTTC 1 cut(s) 169
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 2 cut(s) 193, 258
MunI CAATTG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 1 cut(s) 193
NciI CCSGG 1 cut(s) 258
NlaIII CATG 2 cut(s) 68, 217
NsiI ATGCAT 1 cut(s) 66
PctI GAATGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 169
PfoI TCCNGGA 2 cut(s) 191, 256
PkrI GCNGC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 59
SatI GCNGC 1 cut(s) 222
ScrFI CCNGG 2 cut(s) 193, 258
SetI ASST 2 cut(s) 11, 52
SfaNI GCATC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 4 cut(s) 75, 100, 106, 233
StyD4I CCNGG 2 cut(s) 191, 256
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 1 cut(s) 73
TasI AATT 4 cut(s) 75, 100, 106, 233
TscAI CASTG 2 cut(s) 41, 76
TseI GCWGC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 41, 76
XmnI GAANNNNTTC 1 cut(s) 169
Zsp2I ATGCAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.