Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001210

Physical Location & Seq

Genomic Coordinates Forward (+)

880959 .. 881324

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g01650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGACTACCTTCGGAGCTTCTGGCATGACGTTTCAGTGTGTGTCTGAAGGAAGCCTATCAATGCGGGACACAGAAATTGAACGAAGACCGTACCATAAAAATTGCAACTGTGCACTTCACAAGTCTAAGAGGGGTGCTTGTTCCAATGTCTGTCCTCAACAAAGTAACCTTTCCTTCCCTAAGAAACATTCATGGATCGATGGCTCATTGTGCATGTCAGCAACAATTTCCAAATCCTCCACTCCACCCGGCGCCACATCCATTTCCGTCGGAAATATGGAAAGACTTAATGGTGTCCAATCCTTGTCTCACTCCGTCGGAAATAAGGAAAGTATTAATGGTGTCCAATCCTTGTCTCACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.02

Weight (kDa)

9.24

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001210)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01620 FvH4_1g01630 FvH4_1g01640 FvH4_1g01650 FvH4_1g01670 FvH4_1g01700
malus_domestica	MD15G1158700.v1.1 MD15G1158800.v1.1 MD15G1158900.v1.1 MD15G1159000.v1.1 MD15G1159200.v1.1 MD15G1159300.v1.1 MD15G1159500.v1.1
prunus_persica	Prupe.1G525100_v2.0.a1 Prupe.7G253900_v2.0.a1 Prupe.7G254000_v2.0.a1 Prupe.7G254100_v2.0.a1 Prupe.7G254200_v2.0.a1 Prupe.7G254300_v2.0.a1 Prupe.7G254400_v2.0.a1 Prupe.7G254500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0086491 RchiOBHm_Chr2g0086581 RchiOBHm_Chr2g0086591 RchiOBHm_Chr2g0086601 RchiOBHm_Chr2g0086611 RchiOBHm_Chr2g0086641 RchiOBHm_Chr4g0393981
rosa_laevigata	RLG00000015769
rosa_multiflora	Rmu_ssc0000449.1_g000005
rosa_roxburghii	Rroxscaffold_2G00154360 Rroxscaffold_2G00154380 Rroxscaffold_2G00154390 Rroxscaffold_2G00154400 Rroxscaffold_2G00154410 Rroxscaffold_2G00154420
rosa_samantha	Rh2AG019000 Rh2AG019100 Rh2AG019200 Rh2AG019300 Rh2AG019600 Rh2AG019700 Rh2BG018600 Rh2BG018700 Rh2BG018800 Rh2BG018900 Rh2BG019100 Rh2BG019200 Rh2BG019300 Rh2BG019400 Rh2BG019500 Rh2BG019600
rosa_wichuraiana	Rw2G001600 Rw2G001610 Rw2G001620 Rw2G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	251
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	66
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	1 cut(s)	92
AgsI	TTSAA	1 cut(s)	80
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	2 cut(s)	312, 360
Alw44I	GTGCAC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	203
ApaLI	GTGCAC	1 cut(s)	111
AseI	ATTAAT	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	115
BccI	CCATC	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	312, 360
BfoI	RGCGCY	1 cut(s)	255
Bme1390I	CCNGG	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	249
Bsa29I	ATCGAT	1 cut(s)	198
BsaHI	GRCGYC	1 cut(s)	252
BseCI	ATCGAT	1 cut(s)	198
BseGI	GGATG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	115
BshNI	GGYRCC	1 cut(s)	251
BshVI	ATCGAT	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	80
BsmAI	GTCTC	2 cut(s)	312, 360
BsmFI	GGGAC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	1 cut(s)	195
BspACI	CCGC	1 cut(s)	64
BspDI	ATCGAT	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	1 cut(s)	203
BspT107I	GGYRCC	1 cut(s)	251
BssMI	GATC	1 cut(s)	195
BssNI	GRCGYC	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	90, 110
BstACI	GRCGYC	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	126, 180
BstF5I	GGATG	1 cut(s)	257
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	1 cut(s)	198
BstMAI	GTCTC	2 cut(s)	312, 360
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	247
BstSLI	GKGCMC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	198
BsuTUI	ATCGAT	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	41
CfoI	GCGC	1 cut(s)	254
ClaI	ATCGAT	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	3 cut(s)	25, 192, 214
CviJI	RGCY	3 cut(s)	17, 54, 204
CviKI_1	RGCY	3 cut(s)	17, 54, 204
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	2 cut(s)	126, 180
DinI	GGCGCC	1 cut(s)	253
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	66
EgeI	GGCGCC	1 cut(s)	253
EheI	GGCGCC	1 cut(s)	253
FaeI	CATG	3 cut(s)	28, 195, 217
FaiI	YATR	5 cut(s)	26, 96, 193, 215, 278
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	24, 191, 213
FauI	CCCGC	1 cut(s)	57
FokI	GGATG	1 cut(s)	244
GlaI	GCGC	1 cut(s)	253
HaeII	RGCGCY	1 cut(s)	255
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	3 cut(s)	28, 195, 217
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HpaII	CCGG	1 cut(s)	249
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	4 cut(s)	14, 46, 272, 320
Hpy8I	GTNNAC	1 cut(s)	113
Hpy99I	CGWCG	2 cut(s)	272, 320
HpyAV	CCTTC	3 cut(s)	19, 41, 184
HpyCH4III	ACNGT	2 cut(s)	90, 110
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	3 cut(s)	105, 113, 213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	210
HpyF3I	CTNAG	2 cut(s)	126, 180
HpySE526I	ACGT	1 cut(s)	29
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	28, 195, 217
HspAI	GCGC	1 cut(s)	252
KasI	GGCGCC	1 cut(s)	251
Kzo9I	GATC	1 cut(s)	195
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	2 cut(s)	6, 262
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	3 cut(s)	75, 100, 225
Mly113I	GGCGCC	1 cut(s)	252
MmeI	TCCRAC	2 cut(s)	250, 298
MnlI	CCTC	3 cut(s)	123, 165, 247
MseI	TTAA	2 cut(s)	288, 336
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	1 cut(s)	210
NarI	GGCGCC	1 cut(s)	252
NciI	CCSGG	1 cut(s)	249
NdeII	GATC	1 cut(s)	195
NlaIII	CATG	3 cut(s)	28, 195, 217
NlaIV	GGNNCC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	217
PluTI	GGCGCC	1 cut(s)	255
PshBI	ATTAAT	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	253
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	288, 336
Sau3AI	GATC	1 cut(s)	195
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	4 cut(s)	11, 19, 32, 171
SfoI	GGCGCC	1 cut(s)	253
Sse9I	AATT	3 cut(s)	75, 100, 225
SsiI	CCGC	1 cut(s)	64
SspDI	GGCGCC	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	247
TaaI	ACNGT	2 cut(s)	90, 110
TaiI	ACGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	198
TasI	AATT	3 cut(s)	75, 100, 225
Tru1I	TTAA	2 cut(s)	288, 336
Tru9I	TTAA	2 cut(s)	288, 336
TscAI	CASTG	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	2 cut(s)	256, 304
TspRI	CASTG	1 cut(s)	41
VneI	GTGCAC	1 cut(s)	111
VspI	ATTAAT	1 cut(s)	336
XceI	RCATGY	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.