Prupe.1G525100_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
43024341 .. 43024667
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G525100.1

Sequence Viewer

Length: 327 bp
ATGACTAGCGCAGGAGTTGCTGGGATGATGTTTCAGTGTGTGTTTGAAGGAAGCCTGTCAATGCGGGACTCTGAAATTGAGCGAAGGCCTTACCATAAGAACTGCAGTTGCGCTCTCCACAGGTCCGAGGGGGATGTTTGCTCCAATGCTTGTCAAAGGAACATTTCCTTTCCCAAGAAACAGTCATGGAGTGACGGTTCCTTGTGCATGCAGGCAGCGGCTTCTTCCAGATTCTCTTGTCCTCTCGTAGACGACATGTCCAGAACCATAGGAAACAGAGGAAGTGTGAATGGGGTTCATAATTCTGCCTTGTCACATAGACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.81

Weight (kDa)

8.57

Isoelectric Point (pI)

68.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AciI CCGC 2 cut(s) 64, 218
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 1 cut(s) 47
AhdI GACNNNNNGTC 1 cut(s) 256
AloI GAACNNNNNNTCC 2 cut(s) 181, 213
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 215
AspLEI GCGC 2 cut(s) 11, 113
AspS9I GGNCC 1 cut(s) 123
AvaII GGWCC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 227
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 103
BisI GCNGC 2 cut(s) 216, 219
BlsI GCNGC 2 cut(s) 217, 220
Bme18I GGWCC 1 cut(s) 123
BmeRI GACNNNNNGTC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 2 cut(s) 30, 139
BseXI GCAGC 1 cut(s) 227
BseYI CCCAGC 1 cut(s) 20
BshFI GGCC 1 cut(s) 88
BslFI GGGAC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 1 cut(s) 88
BspACI CCGC 2 cut(s) 64, 218
BspANI GGCC 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 199
BspMAI CTGCAG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 126
Bst4CI ACNGT 2 cut(s) 183, 197
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 209, 213
BstF5I GGATG 2 cut(s) 30, 139
BstHHI GCGC 2 cut(s) 11, 113
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNSI RCATGY 2 cut(s) 211, 259
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 227
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 30, 139
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 2 cut(s) 209, 213
CfoI GCGC 2 cut(s) 11, 113
Cfr13I GGNCC 1 cut(s) 123
CviAII CATG 3 cut(s) 186, 208, 256
CviJI RGCY 3 cut(s) 54, 88, 221
CviKI_1 RGCY 3 cut(s) 54, 88, 221
DriI GACNNNNNGTC 1 cut(s) 256
Eam1105I GACNNNNNGTC 1 cut(s) 256
Eco147I AGGCCT 1 cut(s) 88
Eco47I GGWCC 1 cut(s) 123
FaeI CATG 3 cut(s) 189, 211, 259
FaiI YATR 7 cut(s) 96, 187, 209, 257, 269, 300, 318
FaqI GGGAC 1 cut(s) 80
FatI CATG 3 cut(s) 185, 207, 255
FauI CCCGC 1 cut(s) 57
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 2 cut(s) 216, 219
FokI GGATG 2 cut(s) 37, 146
Fsp4HI GCNGC 2 cut(s) 216, 219
FspBI CTAG 1 cut(s) 6
GlaI GCGC 2 cut(s) 10, 112
GluI GCNGC 2 cut(s) 216, 219
GsaI CCCAGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 88
HhaI GCGC 2 cut(s) 11, 113
Hin1II CATG 3 cut(s) 189, 211, 259
Hin6I GCGC 2 cut(s) 9, 111
HinP1I GCGC 2 cut(s) 9, 111
HinfI GANTC 2 cut(s) 68, 231
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 73, 127
Hpy188III TCNNGA 2 cut(s) 228, 261
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 41, 78
HpyCH4III ACNGT 2 cut(s) 183, 197
HpyCH4V TGCA 3 cut(s) 105, 207, 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
Hsp92II CATG 3 cut(s) 189, 211, 259
HspAI GCGC 2 cut(s) 9, 111
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 6 cut(s) 6, 68, 106, 197, 241, 274
Lsp1109I GCAGC 1 cut(s) 227
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 191, 312
MboII GAAGA 1 cut(s) 216
MluCI AATT 2 cut(s) 75, 301
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 3 cut(s) 121, 252, 272
MspA1I CMGCKG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 17
NlaIII CATG 3 cut(s) 189, 211, 259
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 2 cut(s) 191, 312
NspI RCATGY 2 cut(s) 211, 259
PaeI GCATGC 1 cut(s) 211
PceI AGGCCT 1 cut(s) 88
PciI ACATGT 1 cut(s) 255
PfeI GAWTC 1 cut(s) 231
PkrI GCNGC 2 cut(s) 217, 220
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PscI ACATGT 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 123
PstI CTGCAG 1 cut(s) 107
SatI GCNGC 2 cut(s) 216, 219
Sau96I GGNCC 1 cut(s) 123
SchI GAGTC 1 cut(s) 62
SetI ASST 1 cut(s) 125
SfcI CTRYAG 1 cut(s) 103
SinI GGWCC 1 cut(s) 123
SphI GCATGC 1 cut(s) 211
Sse9I AATT 2 cut(s) 75, 301
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 2 cut(s) 64, 218
SspMI CTAG 1 cut(s) 6
StuI AGGCCT 1 cut(s) 88
TaaI ACNGT 2 cut(s) 183, 197
TasI AATT 2 cut(s) 75, 301
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 1 cut(s) 231
TscAI CASTG 1 cut(s) 41
TseFI GTSAC 2 cut(s) 191, 312
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 2 cut(s) 191, 312
TspDTI ATGAA 1 cut(s) 287
TspRI CASTG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 123
XceI RCATGY 2 cut(s) 211, 259
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.