Rroxscaffold_2G00154360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001210
Physical Location & Seq
Reverse (-)
90967942 .. 90968771
830 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154360.1

Sequence Viewer

Length: 390 bp
ATGGCAACTAAGATGATGCTTCAGTGTGTCTTAGAAGGAAGCATGTCAGTGCATGACATGGAGGTTGAACATAGGCCATACCACCGCAATTGCAGCTGTGCAATGCACAAGGTGAAGGGTAGTTGCTCCAACGACACTTGCTCTCATCAGTCGAATATTTCGTTCCCCAGGAAACAGCCTCAATCTTGTTGCTGGCTCAACACTACGGAACAAAGAAGACTAAGTGCACCATTTCATGCAAAGTACACAGACATACATAGCTCAGACTACTCAGCACAGGGAAACCGTGGAACCAAAGCATGTCATATCTACCTGACAGAAAGCTCAGAGCAAGATGATTTTCTCAGTACCCTGTGTCTTCTCTTCATGATGTCACCATTTTGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.72

Weight (kDa)

7.58

Isoelectric Point (pI)

87.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 112
AfaI GTAC 2 cut(s) 245, 349
AgsI TTSAA 1 cut(s) 68
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 3 cut(s) 96, 261, 324
AluI AGCT 3 cut(s) 96, 261, 324
Alw21I GWGCWC 1 cut(s) 229
Alw44I GTGCAC 1 cut(s) 225
AoxI GGCC 1 cut(s) 74
ApaLI GTGCAC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 93
AsuHPI GGTGA 2 cut(s) 124, 366
BaeGI GKGCMC 1 cut(s) 229
BbsI GAAGAC 2 cut(s) 223, 350
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 169
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 6
BpiI GAAGAC 2 cut(s) 223, 350
BsaJI CCNNGG 2 cut(s) 167, 286
Bse3DI GCAATG 1 cut(s) 108
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 2 cut(s) 167, 286
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 4 cut(s) 276, 285, 339, 358
BseSI GKGCMC 1 cut(s) 229
BseXI GCAGC 1 cut(s) 105
BshFI GGCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 229
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 229
BspACI CCGC 1 cut(s) 85
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 4 cut(s) 275, 284, 338, 357
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 167, 286
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 1 cut(s) 287
Bst6I CTCTTC 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 7 cut(s) 9, 31, 221, 262, 271, 325, 344
BstDSI CCRYGG 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNI CCWGG 1 cut(s) 169
BstNSI RCATGY 2 cut(s) 46, 303
BstSCI CCNGG 1 cut(s) 167
BstSLI GKGCMC 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 105
BstV2I GAAGAC 2 cut(s) 223, 350
BsuRI GGCC 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 286
BtsIMutI CAGTG 2 cut(s) 29, 54
Cac8I GCNNGC 1 cut(s) 194
CciI TCATGA 1 cut(s) 366
Csp6I GTAC 2 cut(s) 244, 348
CspCI CAANNNNNGTGG 2 cut(s) 71, 106
CviAII CATG 6 cut(s) 43, 53, 58, 236, 300, 367
CviJI RGCY 6 cut(s) 76, 96, 178, 196, 261, 324
CviKI_1 RGCY 6 cut(s) 76, 96, 178, 196, 261, 324
CviQI GTAC 2 cut(s) 244, 348
DdeI CTNAG 7 cut(s) 9, 31, 221, 262, 271, 325, 344
DraIII CACNNNGTG 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 368
EarI CTCTTC 1 cut(s) 368
Eco57I CTGAAG 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 167
FaeI CATG 6 cut(s) 46, 56, 61, 239, 303, 370
FatI CATG 6 cut(s) 42, 52, 57, 235, 299, 366
Fnu4HI GCNGC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 94
HaeIII GGCC 1 cut(s) 76
Hin1II CATG 6 cut(s) 46, 56, 61, 239, 303, 370
HphI GGTGA 2 cut(s) 124, 366
Hpy166II GTNNAC 2 cut(s) 227, 246
Hpy188I TCNGA 2 cut(s) 265, 328
Hpy188III TCNNGA 1 cut(s) 367
Hpy8I GTNNAC 2 cut(s) 227, 246
HpyAV CCTTC 2 cut(s) 29, 109
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4V TGCA 7 cut(s) 52, 93, 101, 106, 227, 239, 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
HpyF3I CTNAG 7 cut(s) 9, 31, 221, 262, 271, 325, 344
Hsp92II CATG 6 cut(s) 46, 56, 61, 239, 303, 370
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 6 cut(s) 154, 178, 181, 263, 326, 365
Lsp1109I GCAGC 1 cut(s) 105
LweI GCATC 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 372
MboII GAAGA 3 cut(s) 228, 350, 355
MfeI CAATTG 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 2 cut(s) 55, 189
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 169
MunI CAATTG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 93
NlaIII CATG 6 cut(s) 46, 56, 61, 239, 303, 370
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 372
NspI RCATGY 2 cut(s) 46, 303
PagI TCATGA 1 cut(s) 366
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PkrI GCNGC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 292
PvuII CAGCTG 1 cut(s) 96
RsaI GTAC 2 cut(s) 245, 349
RsaNI GTAC 2 cut(s) 244, 348
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 169
SduI GDGCHC 1 cut(s) 229
SetI ASST 6 cut(s) 66, 98, 114, 263, 315, 326
SfaNI GCATC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 88
SsiI CCGC 1 cut(s) 85
SspI AATATT 1 cut(s) 157
StyD4I CCNGG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 287
TaqI TCGA 1 cut(s) 152
TasI AATT 1 cut(s) 88
TatI WGTACW 1 cut(s) 243
TscAI CASTG 2 cut(s) 29, 54
TseFI GTSAC 1 cut(s) 372
TseI GCWGC 1 cut(s) 93
Tsp45I GTSAC 1 cut(s) 372
TspDTI ATGAA 2 cut(s) 224, 355
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 2 cut(s) 29, 54
VneI GTGCAC 1 cut(s) 225
XceI RCATGY 2 cut(s) 46, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.