Prupe.7G254000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001210
Physical Location & Seq
Forward (+)
21385231 .. 21385560
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G254000.1

Sequence Viewer

Length: 330 bp
ATGACTAGCGCAGGAGTTGCTGGGATGATGTTTCAGTGTGTGTTTGAAGGAAGCCTGTCAATGCGGGACATTGAAATTGAGCGAAGGCCTTACCATAAGAACTGCAGTTGTGCTCTGCACAAGTCCAAGGGGGGTGTTTGCTCCAATGCTTGTCAAAGGAACATTTCCTTTCCCAAGAAACAGTCATGGAGTGATGGTTCCTTGTGCATGCAGGCAGCAGCAGCTTCTTCCAAATTCTCTTCTCCTCTCGTAGGCGACATGTCCACGTCCACAGGAAACAGAGGAAGTGTGAATGGGGTTCATAATTCAGCCTTGTCACATAGACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.63

Weight (kDa)

9.27

Isoelectric Point (pI)

62.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 64
AcsI RAATTY 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 251
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 2 cut(s) 47, 74
AjiI CACGTC 1 cut(s) 267
AloI GAACNNNNNNTCC 2 cut(s) 181, 213
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw21I GWGCWC 1 cut(s) 115
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 3 cut(s) 215, 218, 221
ApoI RAATTY 1 cut(s) 233
AspLEI GCGC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 3 cut(s) 227, 230, 233
BccI CCATC 1 cut(s) 188
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 103
BisI GCNGC 3 cut(s) 216, 219, 222
BlsI GCNGC 3 cut(s) 217, 220, 223
BmgBI CACGTC 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 251
BseRI GAGGAG 1 cut(s) 234
BseXI GCAGC 3 cut(s) 227, 230, 233
BseYI CCCAGC 1 cut(s) 20
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 115
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 115
BspACI CCGC 1 cut(s) 64
BspANI GGCC 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 199
BspMAI CTGCAG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 244
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 209, 213
BstENI CCTNNNNNAGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 30
BstHHI GCGC 1 cut(s) 11
BstMWI GCNNNNNNNGC 2 cut(s) 17, 221
BstNSI RCATGY 2 cut(s) 211, 262
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 3 cut(s) 227, 230, 233
BsuRI GGCC 1 cut(s) 88
BtrI CACGTC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 2 cut(s) 209, 213
CfoI GCGC 1 cut(s) 11
CviAII CATG 3 cut(s) 186, 208, 259
CviJI RGCY 4 cut(s) 54, 88, 224, 311
CviKI_1 RGCY 4 cut(s) 54, 88, 224, 311
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 126
Eco147I AGGCCT 1 cut(s) 88
EcoNI CCTNNNNNAGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 3 cut(s) 189, 211, 262
FaiI YATR 6 cut(s) 96, 187, 209, 260, 303, 321
FaqI GGGAC 1 cut(s) 80
FatI CATG 3 cut(s) 185, 207, 258
FauI CCCGC 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 216, 219, 222
FokI GGATG 1 cut(s) 37
Fsp4HI GCNGC 3 cut(s) 216, 219, 222
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 10
GluI GCNGC 3 cut(s) 216, 219, 222
GsaI CCCAGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 88
HhaI GCGC 1 cut(s) 11
Hin1II CATG 3 cut(s) 189, 211, 262
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
Hpy166II GTNNAC 2 cut(s) 264, 270
Hpy8I GTNNAC 2 cut(s) 264, 270
HpyAV CCTTC 2 cut(s) 41, 78
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 4 cut(s) 105, 118, 207, 211
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 221
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 3 cut(s) 189, 211, 262
HspAI GCGC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 6, 68, 197, 258
Lsp1109I GCAGC 3 cut(s) 227, 230, 233
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 315
MboII GAAGA 2 cut(s) 219, 231
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 3 cut(s) 75, 233, 304
MnlI CCTC 2 cut(s) 255, 275
MwoI GCNNNNNNNGC 2 cut(s) 17, 221
NlaIII CATG 3 cut(s) 189, 211, 262
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 315
NspI RCATGY 2 cut(s) 211, 262
PaeI GCATGC 1 cut(s) 211
PceI AGGCCT 1 cut(s) 88
PciI ACATGT 1 cut(s) 258
PkrI GCNGC 3 cut(s) 217, 220, 223
PscI ACATGT 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 199
PstI CTGCAG 1 cut(s) 107
SatI GCNGC 3 cut(s) 216, 219, 222
SduI GDGCHC 1 cut(s) 115
SetI ASST 2 cut(s) 226, 269
SfcI CTRYAG 1 cut(s) 103
SphI GCATGC 1 cut(s) 211
Sse9I AATT 3 cut(s) 75, 233, 304
SseBI AGGCCT 1 cut(s) 88
SsiI CCGC 1 cut(s) 64
SspMI CTAG 1 cut(s) 6
StuI AGGCCT 1 cut(s) 88
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 183
TaiI ACGT 1 cut(s) 269
TasI AATT 3 cut(s) 75, 233, 304
TscAI CASTG 1 cut(s) 41
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 3 cut(s) 215, 218, 221
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 1 cut(s) 41
XagI CCTNNNNNAGG 1 cut(s) 249
XapI RAATTY 1 cut(s) 233
XceI RCATGY 2 cut(s) 211, 262
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.