Rh2AG019000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001210
Physical Location & Seq
Forward (+)
1429173 .. 1429412
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG019000.1

Sequence Viewer

Length: 240 bp
ATGATGTTTCAGTATGTGTTTGAAGAAAGCCTATCAATGCAGGGCACTGAGATTGAGCGAAGACCGTACCATAAGAACTGCAATTGTGTGCTGCACAAGTCCAAGGGTAGTGCTTGCTCCAATGCTGATCCTCAGCGAAGGAACATTTCCTTCTCCAAGAAACAGTCCTGGAGCAACACTTCCTTGTGCATATCAGCCATAGTTCCTTCCAAATTCTCTTCATCCAAATCCTCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.99

Weight (kDa)

9.42

Isoelectric Point (pI)

77.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 212
AfaI GTAC 1 cut(s) 68
AgsI TTSAA 1 cut(s) 23
AjnI CCWGG 1 cut(s) 167
AlwI GGATC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 91
ApoI RAATTY 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 67
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 169
BisI GCNGC 1 cut(s) 92
BlsI GCNGC 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 67
BpmI CTGGAG 1 cut(s) 190
Bpu10I CCTNAGC 1 cut(s) 132
BsaJI CCNNGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 39, 146
BseSI GKGCMC 1 cut(s) 47
BseXI GCAGC 1 cut(s) 78
BsgI GTGCAG 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 47
Bsp143I GATC 1 cut(s) 127
BspCNI CTCAG 2 cut(s) 40, 145
BspPI GGATC 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 2 cut(s) 66, 165
Bst6I CTCTTC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 48, 132
BstF5I GGATG 1 cut(s) 221
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 167
BstSLI GKGCMC 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 78
BstV2I GAAGAC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 67
CviJI RGCY 2 cut(s) 30, 197
CviKI_1 RGCY 2 cut(s) 30, 197
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 48, 132
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 167
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
FaiI YATR 4 cut(s) 15, 72, 191, 200
Fnu4HI GCNGC 1 cut(s) 92
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 92
GluI GCNGC 1 cut(s) 92
GsuI CTGGAG 1 cut(s) 190
HpyAV CCTTC 3 cut(s) 132, 160, 216
HpyCH4III ACNGT 2 cut(s) 66, 165
HpyCH4V TGCA 4 cut(s) 40, 81, 94, 189
HpyF3I CTNAG 2 cut(s) 48, 132
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 2 cut(s) 122, 171
LpnPI CCDG 3 cut(s) 26, 154, 181
Lsp1109I GCAGC 1 cut(s) 78
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 3 cut(s) 35, 72, 210
MfeI CAATTG 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 47
MluCI AATT 2 cut(s) 82, 212
MnlI CCTC 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 169
MunI CAATTG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 169
NdeII GATC 1 cut(s) 127
PfoI TCCNGGA 1 cut(s) 167
PkrI GCNGC 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SatI GCNGC 1 cut(s) 92
Sau3AI GATC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 169
SduI GDGCHC 1 cut(s) 47
SgeI CNNG 8 cut(s) 53, 109, 115, 126, 169, 180, 181, 196
Sse9I AATT 2 cut(s) 82, 212
StyD4I CCNGG 1 cut(s) 167
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 66, 165
TasI AATT 2 cut(s) 82, 212
TscAI CASTG 1 cut(s) 52
TseI GCWGC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 1 cut(s) 52
XapI RAATTY 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.