Rroxscaffold_2G00154400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001210
Physical Location & Seq
Forward (+)
90994413 .. 90994739
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154400.1

Sequence Viewer

Length: 327 bp
ATGGCTACTTTCGGGATTTCTGGTATGATGTTTCAGTGTGTGTTTGAAGGAAGTCTATCTATGCAGGACACCGAAATTGAGCGAAGGCCATACCATAAGAACTGCAATTGTGCGCTGCACAGGTCCATGGGTGATGCTTGCTCCAATGCTTGTCCTCAACAAAGGAACATTTCCTTCCCCAAGAAACAGACGTCATGGGCCGACAGTTCCTTATGCATTGCAATAGCTTCAAAGTTCTCTTCTCAGCATTCCTTTCTGGCCAACACATCCACGTCCAACGGAAACAGAGAAAGTGTGAATGACGTTCCATCAGTGCTTGTCACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.85

Weight (kDa)

7.62

Isoelectric Point (pI)

60.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 258
AcyI GRCGYC 1 cut(s) 191
AgsI TTSAA 2 cut(s) 47, 231
AjiI CACGTC 1 cut(s) 273
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
AoxI GGCC 3 cut(s) 86, 198, 258
ApeKI GCWGC 1 cut(s) 115
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 123, 198
AsuHPI GGTGA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 123
BalI TGGCCA 1 cut(s) 260
BbvI GCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 316
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 123
BmgBI CACGTC 1 cut(s) 273
BmgT120I GGNCC 2 cut(s) 123, 198
BmsI GCATC 1 cut(s) 124
BsaHI GRCGYC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 266
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 3 cut(s) 88, 200, 260
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 3 cut(s) 88, 200, 260
Bsp19I CCATGG 1 cut(s) 126
BspANI GGCC 3 cut(s) 88, 200, 260
BspCNI CTCAG 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 126
BssNI GRCGYC 1 cut(s) 191
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 244
BstACI GRCGYC 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 1 cut(s) 243
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 266
BstHHI GCGC 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 3 cut(s) 88, 200, 260
BtgI CCRYGG 1 cut(s) 126
BtrI CACGTC 1 cut(s) 273
BtsCI GGATG 1 cut(s) 266
BtsIMutI CAGTG 2 cut(s) 41, 318
Cac8I GCNNGC 1 cut(s) 139
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 123, 198
CviAII CATG 2 cut(s) 127, 195
CviJI RGCY 5 cut(s) 5, 88, 200, 227, 260
CviKI_1 RGCY 5 cut(s) 5, 88, 200, 227, 260
DdeI CTNAG 1 cut(s) 243
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 130, 198
FaiI YATR 8 cut(s) 26, 62, 91, 96, 128, 196, 214, 325
FatI CATG 2 cut(s) 126, 194
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 116
GlaI GCGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 116
HaeIII GGCC 3 cut(s) 88, 200, 260
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 191
Hin1II CATG 2 cut(s) 130, 198
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HphI GGTGA 1 cut(s) 143
Hpy188III TCNNGA 1 cut(s) 13
HpyAV CCTTC 3 cut(s) 41, 78, 184
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4IV ACGT 3 cut(s) 191, 272, 303
HpyCH4V TGCA 5 cut(s) 64, 105, 118, 216, 221
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 3 cut(s) 191, 272, 303
Hsp92I GRCGYC 1 cut(s) 191
Hsp92II CATG 2 cut(s) 130, 198
HspAI GCGC 1 cut(s) 113
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 6, 50, 106, 242
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 124
MaeII ACGT 3 cut(s) 191, 272, 303
MaeIII GTNAC 1 cut(s) 319
MboII GAAGA 1 cut(s) 231
MfeI CAATTG 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 2 cut(s) 75, 106
MluNI TGGCCA 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 300
MnlI CCTC 1 cut(s) 165
Mox20I TGGCCA 1 cut(s) 260
Mph1103I ATGCAT 1 cut(s) 218
MscI TGGCCA 1 cut(s) 260
Msp20I TGGCCA 1 cut(s) 260
MunI CAATTG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 247
NcoI CCATGG 1 cut(s) 126
NlaIII CATG 2 cut(s) 130, 198
NmuCI GTSAC 1 cut(s) 319
NsiI ATGCAT 1 cut(s) 218
PctI GAATGC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 123, 198
SatI GCNGC 1 cut(s) 116
Sau96I GGNCC 2 cut(s) 123, 198
SetI ASST 5 cut(s) 125, 194, 229, 275, 306
SfaNI GCATC 1 cut(s) 124
SinI GGWCC 1 cut(s) 123
Sse9I AATT 2 cut(s) 75, 106
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 206
TaiI ACGT 3 cut(s) 194, 275, 306
TasI AATT 2 cut(s) 75, 106
TscAI CASTG 2 cut(s) 41, 318
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 294
TspRI CASTG 2 cut(s) 41, 318
VpaK11BI GGWCC 1 cut(s) 123
ZraI GACGTC 1 cut(s) 192
Zsp2I ATGCAT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.