RchiOBHm_Chr2g0086491

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
1625634 .. 1625891
258 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46200

Sequence Viewer

Length: 258 bp
ATGACTACCTTGGGAGTTTCCGGTTTGATGTTTCAGTGTGTGTTTGAAGGAAGCCTGTCAATGAAGGACACAGAAATTGAGAGAAGGCCATACCATAAAAACTGCAACTGTGCACTGCACAAGTCCAAGGGCGGTGCTTGCTTGAATTCTTGTTCTCAGCAAAGGAGCATTTCGTTCCCCACGAAAAAGTCATGGACAGATAGCTCCTTGTGCTTAGCCACAGATTCTAAAGCTTCTAAGCATTCTGTTCTCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.29

Weight (kDa)

9.04

Isoelectric Point (pI)

61.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 132
AcsI RAATTY 1 cut(s) 145
AgsI TTSAA 2 cut(s) 47, 145
AluBI AGCT 3 cut(s) 204, 233, 255
AluI AGCT 3 cut(s) 204, 233, 255
Alw21I GWGCWC 1 cut(s) 115
Alw44I GTGCAC 1 cut(s) 111
AoxI GGCC 1 cut(s) 86
ApaLI GTGCAC 1 cut(s) 111
ApoI RAATTY 1 cut(s) 145
BaeGI GKGCMC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 115
BfaI CTAG 1 cut(s) 256
BlpI GCTNAGC 1 cut(s) 214
Bpu1102I GCTNAGC 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 9, 126
BsaWI WCCGGW 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 9, 126
BseMII CTCAG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 1 cut(s) 21
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 115
Bsp1720I GCTNAGC 1 cut(s) 214
BspACI CCGC 1 cut(s) 132
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 9, 126
BssT1I CCWWGG 2 cut(s) 9, 126
Bst4CI ACNGT 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 4 cut(s) 156, 214, 237, 251
BstMWI GCNNNNNNNGC 2 cut(s) 138, 210
BstSLI GKGCMC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 113
BtsIMutI CAGTG 2 cut(s) 41, 113
Cac8I GCNNGC 1 cut(s) 139
CviAII CATG 1 cut(s) 192
CviJI RGCY 6 cut(s) 54, 88, 204, 218, 233, 255
CviKI_1 RGCY 6 cut(s) 54, 88, 204, 218, 233, 255
DdeI CTNAG 4 cut(s) 156, 214, 237, 251
Eco130I CCWWGG 2 cut(s) 9, 126
EcoRI GAATTC 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 9, 126
ErhI CCWWGG 2 cut(s) 9, 126
FaeI CATG 1 cut(s) 195
FaiI YATR 3 cut(s) 91, 96, 193
FatI CATG 1 cut(s) 191
FspBI CTAG 1 cut(s) 256
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 21
Hin1II CATG 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 1 cut(s) 224
HpaII CCGG 1 cut(s) 21
Hpy166II GTNNAC 1 cut(s) 113
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 3 cut(s) 41, 58, 78
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 105, 113, 118
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 210
HpyF3I CTNAG 4 cut(s) 156, 214, 237, 251
Hsp92II CATG 1 cut(s) 195
LmnI GCTCC 2 cut(s) 165, 209
LpnPI CCDG 2 cut(s) 34, 68
MaeI CTAG 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 2 cut(s) 75, 145
MspI CCGG 1 cut(s) 21
Mva1269I GAATGC 1 cut(s) 241
MwoI GCNNNNNNNGC 2 cut(s) 138, 210
NlaIII CATG 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 115
SetI ASST 4 cut(s) 11, 206, 235, 257
Sse9I AATT 2 cut(s) 75, 145
SsiI CCGC 1 cut(s) 132
SspMI CTAG 1 cut(s) 256
StyI CCWWGG 2 cut(s) 9, 126
TaaI ACNGT 1 cut(s) 110
TasI AATT 2 cut(s) 75, 145
TfiI GAWTC 1 cut(s) 224
TscAI CASTG 2 cut(s) 41, 120
TspDTI ATGAA 1 cut(s) 77
TspRI CASTG 2 cut(s) 41, 120
VneI GTGCAC 1 cut(s) 111
XapI RAATTY 1 cut(s) 145
XspI CTAG 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.