FvH4_1g01700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001210
Physical Location & Seq
Forward (+)
899662 .. 899943
282 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01700.t1

Sequence Viewer

Length: 282 bp
ATGACTAACATAGGAGGAGTCGCAACGATGATGTTCGAAGGAAGTCTTTCCATCAGAGACACCGGAATCGAGCGCCGGCCGTACCACAAAAACTGCAACTGCGCTCTCCACAAGTCCAATAATGCCGCCTCTTGCTCCAATGCATTTCGAAACCTCTCCTTCCCGATCAAACAGTCAAGGACAGACAACTCTTACGGCATATCATCACCAAACTCCAAACTCTCTTCCTCTTCTCCACATCCTCAGTCTCTCGGCGCTTCCTTAGGGTTAGAGTTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

9.95

Weight (kDa)

9.3

Isoelectric Point (pI)

64.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 77
AfaI GTAC 1 cut(s) 83
AluBI AGCT 1 cut(s) 279
AluI AGCT 1 cut(s) 279
Alw26I GTCTC 2 cut(s) 51, 252
AoxI GGCC 1 cut(s) 77
Asp700I GAANNNNTTC 1 cut(s) 46
AspLEI GCGC 3 cut(s) 75, 104, 257
AsuHPI GGTGA 1 cut(s) 198
AsuII TTCGAA 2 cut(s) 36, 148
AxyI CCTNAGG 1 cut(s) 262
BccI CCATC 1 cut(s) 59
BceAI ACGGC 2 cut(s) 64, 211
BcoDI GTCTC 2 cut(s) 51, 252
BfaI CTAG 1 cut(s) 280
BfoI RGCGCY 2 cut(s) 76, 258
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bpu14I TTCGAA 2 cut(s) 36, 148
BsaWI WCCGGW 1 cut(s) 62
Bse118I RCCGGY 1 cut(s) 75
Bse21I CCTNAGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 238
BseMII CTCAG 1 cut(s) 257
BseRI GAGGAG 1 cut(s) 30
BseX3I CGGCCG 1 cut(s) 77
Bsh1285I CGRYCG 1 cut(s) 80
BshFI GGCC 1 cut(s) 79
BsiEI CGRYCG 1 cut(s) 80
BsiSI CCGG 2 cut(s) 63, 76
BsmAI GTCTC 2 cut(s) 51, 252
BsnI GGCC 1 cut(s) 79
Bsp119I TTCGAA 2 cut(s) 36, 148
Bsp143I GATC 1 cut(s) 165
BspACI CCGC 1 cut(s) 126
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 256
BspT104I TTCGAA 2 cut(s) 36, 148
BsrFI RCCGGY 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 75
BssMI GATC 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 174
Bst6I CTCTTC 2 cut(s) 229, 235
BstBI TTCGAA 2 cut(s) 36, 148
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 2 cut(s) 243, 262
BstF5I GGATG 1 cut(s) 238
BstH2I RGCGCY 2 cut(s) 76, 258
BstHHI GCGC 3 cut(s) 75, 104, 257
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 2 cut(s) 51, 252
BstMBI GATC 1 cut(s) 165
BstMCI CGRYCG 1 cut(s) 80
BstZI CGGCCG 1 cut(s) 77
Bsu36I CCTNAGG 1 cut(s) 262
BsuRI GGCC 1 cut(s) 79
BtsCI GGATG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 77
CfoI GCGC 3 cut(s) 75, 104, 257
Cfr10I RCCGGY 1 cut(s) 75
Csp6I GTAC 1 cut(s) 82
CviJI RGCY 2 cut(s) 79, 279
CviKI_1 RGCY 2 cut(s) 79, 279
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 2 cut(s) 243, 262
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
EaeI YGGCCR 1 cut(s) 77
EagI CGGCCG 1 cut(s) 77
Eam1104I CTCTTC 2 cut(s) 229, 235
EarI CTCTTC 2 cut(s) 229, 235
EclXI CGGCCG 1 cut(s) 77
Eco52I CGGCCG 1 cut(s) 77
Eco81I CCTNAGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 145
FaiI YATR 2 cut(s) 11, 200
FalI AAGNNNNNCTT 2 cut(s) 30, 62
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 280
GlaI GCGC 3 cut(s) 74, 103, 256
GluI GCNGC 1 cut(s) 126
HaeII RGCGCY 2 cut(s) 76, 258
HaeIII GGCC 1 cut(s) 79
HapII CCGG 2 cut(s) 63, 76
HhaI GCGC 3 cut(s) 75, 104, 257
Hin6I GCGC 3 cut(s) 73, 102, 255
HinP1I GCGC 3 cut(s) 73, 102, 255
HinfI GANTC 2 cut(s) 18, 66
HpaII CCGG 2 cut(s) 63, 76
HphI GGTGA 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 163
HpyAV CCTTC 2 cut(s) 32, 169
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 96, 143
HpyF3I CTNAG 2 cut(s) 243, 262
HspAI GCGC 3 cut(s) 73, 102, 255
KroI GCCGGC 1 cut(s) 75
KroNI GCCGGC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 2 cut(s) 76, 89
MaeI CTAG 1 cut(s) 280
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 2 cut(s) 216, 222
MlyI GAGTC 1 cut(s) 27
MnlI CCTC 5 cut(s) 8, 139, 164, 238, 252
Mph1103I ATGCAT 1 cut(s) 145
MroNI GCCGGC 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 46
MspI CCGG 2 cut(s) 63, 76
NaeI GCCGGC 1 cut(s) 77
NdeII GATC 1 cut(s) 165
NgoMIV GCCGGC 1 cut(s) 75
NmeAIII GCCGAG 1 cut(s) 231
NsiI ATGCAT 1 cut(s) 145
NspV TTCGAA 2 cut(s) 36, 148
PdiI GCCGGC 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 66
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 1 cut(s) 165
SchI GAGTC 1 cut(s) 27
SetI ASST 2 cut(s) 156, 281
SfuI TTCGAA 2 cut(s) 36, 148
SgeI CNNG 8 cut(s) 75, 82, 88, 124, 144, 175, 189, 263
SsiI CCGC 1 cut(s) 126
SspMI CTAG 1 cut(s) 280
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 36, 69, 148
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 66
XmnI GAANNNNTTC 1 cut(s) 46
XspI CTAG 1 cut(s) 280
Zsp2I ATGCAT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.