Rh2BG019100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001210
Physical Location & Seq
Forward (+)
1384573 .. 1384970
398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG019100.1

Sequence Viewer

Length: 327 bp
ATGACTACCTTTGGAGTATCTGGTATGATCTTTCAGTGTGTGTTTGAAGGAAGCCTGTCAATGCAGGACATGGAAATTGAGCGCAGGCCATACCATAAAAACTGCAACTGTGCGCTCCACAACTCCAAGGGTGGTGCTTTCTCCAATGCTTGTGCACAGAGGAACATTTCCTTCCCCAAGAAACAATCATGGACAGATAGCTCCTTATGCATGTCAGCAGCAACTACCAAATTGTCTTCTCAGCATTGTCTTCCTGGCAACACATCCACATCCACTGGAAACAGAGAAAGTGGGAATGGAGTTCATTCCTTGTCACATAGACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.75

Weight (kDa)

8.88

Isoelectric Point (pI)

59.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
Alw21I GWGCWC 1 cut(s) 157
Alw44I GTGCAC 1 cut(s) 153
AoxI GGCC 1 cut(s) 86
ApaLI GTGCAC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 218
AspLEI GCGC 2 cut(s) 84, 115
BaeGI GKGCMC 1 cut(s) 157
BbsI GAAGAC 2 cut(s) 228, 242
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 255
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 255
BpiI GAAGAC 2 cut(s) 228, 242
BsaJI CCNNGG 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 2 cut(s) 263, 269
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 280
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 1 cut(s) 230
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 157
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 27
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 253
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 263, 269
BstHHI GCGC 2 cut(s) 84, 115
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 230
BstV2I GAAGAC 2 cut(s) 228, 242
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 263, 269
BtsIMutI CAGTG 2 cut(s) 41, 273
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 2 cut(s) 84, 115
CviAII CATG 3 cut(s) 70, 189, 211
CviJI RGCY 3 cut(s) 54, 88, 201
CviKI_1 RGCY 3 cut(s) 54, 88, 201
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 3 cut(s) 73, 192, 214
FaiI YATR 8 cut(s) 26, 71, 91, 96, 190, 208, 212, 318
FatI CATG 3 cut(s) 69, 188, 210
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 2 cut(s) 250, 256
Fsp4HI GCNGC 1 cut(s) 219
GlaI GCGC 2 cut(s) 83, 114
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 88
HhaI GCGC 2 cut(s) 84, 115
Hin1II CATG 3 cut(s) 73, 192, 214
Hin6I GCGC 2 cut(s) 82, 113
HinP1I GCGC 2 cut(s) 82, 113
Hpy166II GTNNAC 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 41, 181
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 4 cut(s) 64, 105, 155, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 3 cut(s) 73, 192, 214
HspAI GCGC 2 cut(s) 82, 113
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 2 cut(s) 120, 206
LpnPI CCDG 7 cut(s) 6, 50, 68, 70, 240, 261, 267
Lsp1109I GCAGC 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 312
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 2 cut(s) 228, 242
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 2 cut(s) 75, 230
MnlI CCTC 1 cut(s) 153
Mph1103I ATGCAT 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 207
NdeII GATC 1 cut(s) 27
NlaIII CATG 3 cut(s) 73, 192, 214
NmuCI GTSAC 1 cut(s) 312
NsiI ATGCAT 1 cut(s) 212
NspI RCATGY 1 cut(s) 214
PkrI GCNGC 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 27
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 157
SetI ASST 2 cut(s) 11, 203
Sse9I AATT 2 cut(s) 75, 230
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 110
TasI AATT 2 cut(s) 75, 230
TscAI CASTG 2 cut(s) 41, 280
TseFI GTSAC 1 cut(s) 312
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 312
TspDTI ATGAA 1 cut(s) 293
TspRI CASTG 2 cut(s) 41, 280
VneI GTGCAC 1 cut(s) 153
XceI RCATGY 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.