FvH4_1g01670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001210
Physical Location & Seq
Forward (+)
891458 .. 891787
330 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01670.t1

Sequence Viewer

Length: 330 bp
ATGACTACCTTGGGAGTTTCTGGCATGATTTTCCAGTGTGTGTTTGAAGGAAGTATCTCAATGAAGGACACAGAAATTGAGCGCAGGCCATACCATAAGAACTGCAACTGTGCGCTGCACAAGTCAAAAGGGGGTGTTTGCCACAATGCTTGTCAACAAAGGAACATTTCCTTCCCCAACAAACAGTTATGGACGGATGGCTCCTTATGCATGTCAACAGCGACTTCCAAATTCTCTTCTTCTCAGCAGTCTCTTCTAGGCAACACGTCCATGTCCAGAACTGGAAACAGAGAAAGCATGACTGAGACTCATTCCTCAACACATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.08

Weight (kDa)

9.08

Isoelectric Point (pI)

74.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 230
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 1 cut(s) 47
AjiI CACGTC 1 cut(s) 267
Alw26I GTCTC 2 cut(s) 255, 299
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 230
AspLEI GCGC 2 cut(s) 84, 115
BbvI GCAGC 1 cut(s) 102
BccI CCATC 1 cut(s) 191
BcoDI GTCTC 2 cut(s) 255, 299
BfaI CTAG 1 cut(s) 257
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BmgBI CACGTC 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 9
Bse1I ACTGG 2 cut(s) 34, 286
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 257, 294
BseNI ACTGG 2 cut(s) 34, 286
BseXI GCAGC 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 255, 299
BsnI GGCC 1 cut(s) 88
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 2 cut(s) 256, 295
BspLI GGNNCC 1 cut(s) 202
BsrI ACTGG 2 cut(s) 34, 286
BssECI CCNNGG 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 9
Bst4CI ACNGT 2 cut(s) 110, 186
Bst6I CTCTTC 2 cut(s) 241, 258
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 2 cut(s) 243, 303
BstF5I GGATG 1 cut(s) 202
BstHHI GCGC 2 cut(s) 84, 115
BstMAI GTCTC 2 cut(s) 255, 299
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 88
BtrI CACGTC 1 cut(s) 267
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 2 cut(s) 84, 115
CspCI CAANNNNNGTGG 2 cut(s) 131, 166
CviAII CATG 4 cut(s) 25, 211, 271, 298
CviJI RGCY 2 cut(s) 88, 201
CviKI_1 RGCY 2 cut(s) 88, 201
DdeI CTNAG 2 cut(s) 243, 303
Eam1104I CTCTTC 2 cut(s) 241, 258
EarI CTCTTC 2 cut(s) 241, 258
Eco130I CCWWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 4 cut(s) 28, 214, 274, 301
FaiI YATR 9 cut(s) 26, 91, 96, 190, 208, 212, 272, 299, 324
FatI CATG 4 cut(s) 24, 210, 270, 297
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 116
FspBI CTAG 1 cut(s) 257
GlaI GCGC 2 cut(s) 83, 114
GluI GCNGC 1 cut(s) 116
HaeIII GGCC 1 cut(s) 88
HhaI GCGC 2 cut(s) 84, 115
Hin1II CATG 4 cut(s) 28, 214, 274, 301
Hin6I GCGC 2 cut(s) 82, 113
HinP1I GCGC 2 cut(s) 82, 113
HincII GTYRAC 2 cut(s) 155, 216
HindII GTYRAC 2 cut(s) 155, 216
HinfI GANTC 1 cut(s) 307
Hpy166II GTNNAC 2 cut(s) 155, 216
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 2 cut(s) 155, 216
HpyAV CCTTC 3 cut(s) 41, 58, 181
HpyCH4III ACNGT 2 cut(s) 110, 186
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 3 cut(s) 105, 118, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 2 cut(s) 243, 303
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 4 cut(s) 28, 214, 274, 301
HspAI GCGC 2 cut(s) 82, 113
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 5 cut(s) 6, 47, 70, 267, 289
Lsp1109I GCAGC 1 cut(s) 102
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 266
MboII GAAGA 3 cut(s) 228, 231, 245
MluCI AATT 2 cut(s) 75, 230
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 1 cut(s) 325
Mph1103I ATGCAT 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 207
NlaIII CATG 4 cut(s) 28, 214, 274, 301
NlaIV GGNNCC 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 212
NspI RCATGY 1 cut(s) 214
PkrI GCNGC 1 cut(s) 117
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 269
SatI GCNGC 1 cut(s) 116
SchI GAGTC 1 cut(s) 301
SetI ASST 2 cut(s) 11, 269
SmiMI CAYNNNNRTG 1 cut(s) 269
Sse9I AATT 2 cut(s) 75, 230
SspMI CTAG 1 cut(s) 257
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 110, 186
TaiI ACGT 1 cut(s) 269
TasI AATT 2 cut(s) 75, 230
TscAI CASTG 1 cut(s) 41
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 1 cut(s) 41
XapI RAATTY 1 cut(s) 230
XceI RCATGY 1 cut(s) 214
XspI CTAG 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.