MD15G1159200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0001210
Physical Location & Seq
Forward (+)
11903559 .. 11903840
282 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1159200.v1.1.491

Sequence Viewer

Length: 282 bp
ATGTCTAGCGCAGCAGTTGCCGGGATGATGTTTCAGTGTGTGTTCGAAGGAAGCCTTTCAATGCAGGATACAGAGATTGAGCGAAGGCCATATCATAAGAACTGCAGTTGCGCTCTGCACTCCAAGGCCAGTATTTGCTCCAATGCATATCAAGGGAACATTTCATTCCCAAAGAAGCAGTCATGGAGTGATAGTTCCTTACGCATGCAGGGGTTAGCTACTTCCAAATTCTCTTCTCCTCTCGCCGGCAACATGTCCACATCCATTGAAAAGAGAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.16

Weight (kDa)

9.07

Isoelectric Point (pI)

75.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 2 cut(s) 60, 269
AloI GAACNNNNNNTCC 2 cut(s) 178, 210
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
AoxI GGCC 2 cut(s) 86, 126
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 227
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
Asp700I GAANNNNTTC 1 cut(s) 55
AspLEI GCGC 2 cut(s) 11, 113
AsuC2I CCSGG 1 cut(s) 22
AsuII TTCGAA 1 cut(s) 45
BbvI GCAGC 1 cut(s) 23
BciVI GTATCC 1 cut(s) 61
BcnI CCSGG 1 cut(s) 22
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 103
BfuI GTATCC 1 cut(s) 61
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 22
BmrFI CCNGG 1 cut(s) 22
Bpu14I TTCGAA 1 cut(s) 45
BpuMI CCSGG 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 2 cut(s) 30, 260
BseLI CCNNNNNNNGG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 129
BseRI GAGGAG 1 cut(s) 228
BseXI GCAGC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 2 cut(s) 88, 128
BsiSI CCGG 2 cut(s) 21, 246
BslI CCNNNNNNNGG 1 cut(s) 245
BsnI GGCC 2 cut(s) 88, 128
Bsp119I TTCGAA 1 cut(s) 45
BspANI GGCC 2 cut(s) 88, 128
BspMAI CTGCAG 1 cut(s) 107
BspT104I TTCGAA 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 1 cut(s) 129
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 123
Bst6I CTCTTC 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 45
BstC8I GCNNGC 2 cut(s) 206, 247
BstF5I GGATG 2 cut(s) 30, 260
BstHHI GCGC 2 cut(s) 11, 113
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNSI RCATGY 2 cut(s) 208, 256
BstSCI CCNGG 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 23
BsuI GTATCC 1 cut(s) 61
BsuRI GGCC 2 cut(s) 88, 128
BtsCI GGATG 2 cut(s) 30, 260
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 2 cut(s) 206, 247
CfoI GCGC 2 cut(s) 11, 113
Cfr10I RCCGGY 1 cut(s) 245
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 3 cut(s) 183, 205, 253
CviJI RGCY 4 cut(s) 54, 88, 128, 218
CviKI_1 RGCY 4 cut(s) 54, 88, 128, 218
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 3 cut(s) 186, 208, 256
FaiI YATR 6 cut(s) 91, 96, 148, 184, 206, 254
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FatI CATG 3 cut(s) 182, 204, 252
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 2 cut(s) 37, 247
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 6
GlaI GCGC 2 cut(s) 10, 112
GluI GCNGC 1 cut(s) 12
HaeIII GGCC 2 cut(s) 88, 128
HapII CCGG 2 cut(s) 21, 246
HhaI GCGC 2 cut(s) 11, 113
Hin1II CATG 3 cut(s) 186, 208, 256
Hin6I GCGC 2 cut(s) 9, 111
HinP1I GCGC 2 cut(s) 9, 111
HpaII CCGG 2 cut(s) 21, 246
Hpy166II GTNNAC 1 cut(s) 258
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 2 cut(s) 41, 78
HpyCH4V TGCA 5 cut(s) 64, 105, 118, 146, 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
Hsp92II CATG 3 cut(s) 186, 208, 256
HspAI GCGC 2 cut(s) 9, 111
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 5 cut(s) 34, 50, 142, 194, 259
Lsp1109I GCAGC 1 cut(s) 23
MaeI CTAG 1 cut(s) 6
MboII GAAGA 1 cut(s) 225
MluCI AATT 1 cut(s) 227
MnlI CCTC 1 cut(s) 249
Mph1103I ATGCAT 1 cut(s) 148
MroNI GCCGGC 1 cut(s) 245
MroXI GAANNNNTTC 1 cut(s) 55
MspI CCGG 2 cut(s) 21, 246
MspR9I CCNGG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 17
NaeI GCCGGC 1 cut(s) 247
NciI CCSGG 1 cut(s) 22
NgoMIV GCCGGC 1 cut(s) 245
NlaIII CATG 3 cut(s) 186, 208, 256
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 2 cut(s) 208, 256
NspV TTCGAA 1 cut(s) 45
PaeI GCATGC 1 cut(s) 208
PciI ACATGT 1 cut(s) 252
PdiI GCCGGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 55
PkrI GCNGC 1 cut(s) 13
PscI ACATGT 1 cut(s) 252
PstI CTGCAG 1 cut(s) 107
SatI GCNGC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 22
SetI ASST 1 cut(s) 220
SfcI CTRYAG 1 cut(s) 103
SfuI TTCGAA 1 cut(s) 45
SphI GCATGC 1 cut(s) 208
Sse9I AATT 1 cut(s) 227
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 20
StyI CCWWGG 1 cut(s) 123
TaqI TCGA 1 cut(s) 45
TasI AATT 1 cut(s) 227
TscAI CASTG 1 cut(s) 41
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 153
TspRI CASTG 1 cut(s) 41
XapI RAATTY 1 cut(s) 227
XceI RCATGY 2 cut(s) 208, 256
XmnI GAANNNNTTC 1 cut(s) 55
XspI CTAG 1 cut(s) 6
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.