RchiOBHm_Chr2g0086611

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001210
Physical Location & Seq
Forward (+)
1693881 .. 1694207
327 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46212

Sequence Viewer

Length: 327 bp
ATGGCTACTTTGGGGATTTCTGGTATGATGTTTCACTGTGTGTTTGAAGGAAGTCTATCTATGCAGGACACCGAAATTGAGCGAAGGCCATACCATAAGAACTGTAATTGTGCGCTGCACAGGTCCATGGGTGATGCTTGCTCCAATGCTTGTCCTCAACAAAGGAACATTTCCTTCCCCAAGAAACAGTCATGGGCCGACAGTTTCTTATGCATTGCAACAGCTTCAAAATTCTCTTCTCAGCATTCCTTTCTGGCCAACACATCCACGTTCACTGGAAACAGAGAAAGTGTGAATGGCGCTCAGTGCTTGTCACATAGACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.98

Weight (kDa)

8.56

Isoelectric Point (pI)

61.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 1 cut(s) 230
AdeI CACNNNGTG 1 cut(s) 40
AgsI TTSAA 2 cut(s) 47, 228
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
AoxI GGCC 3 cut(s) 86, 195, 255
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 230
AspLEI GCGC 2 cut(s) 115, 302
AspS9I GGNCC 2 cut(s) 123, 195
AsuHPI GGTGA 1 cut(s) 143
AvaII GGWCC 1 cut(s) 123
BalI TGGCCA 1 cut(s) 257
BbvI GCAGC 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 303
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 2 cut(s) 123, 195
BmsI GCATC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 126
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 254, 317
BseNI ACTGG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 101
BshFI GGCC 3 cut(s) 88, 197, 257
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 3 cut(s) 88, 197, 257
Bsp19I CCATGG 1 cut(s) 126
BspANI GGCC 3 cut(s) 88, 197, 257
BspCNI CTCAG 2 cut(s) 253, 316
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 4 cut(s) 38, 104, 189, 203
Bst6I CTCTTC 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 2 cut(s) 240, 303
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 263
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 2 cut(s) 115, 302
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 3 cut(s) 88, 197, 257
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 263
BtsIMutI CAGTG 3 cut(s) 34, 273, 311
Cac8I GCNNGC 1 cut(s) 139
CfoI GCGC 2 cut(s) 115, 302
Cfr13I GGNCC 2 cut(s) 123, 195
CviAII CATG 2 cut(s) 127, 192
CviJI RGCY 5 cut(s) 5, 88, 197, 224, 257
CviKI_1 RGCY 5 cut(s) 5, 88, 197, 224, 257
DdeI CTNAG 2 cut(s) 240, 303
DraIII CACNNNGTG 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 130, 195
FaiI YATR 8 cut(s) 26, 62, 91, 96, 128, 193, 211, 318
FatI CATG 2 cut(s) 126, 191
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 116
GlaI GCGC 2 cut(s) 114, 301
GluI GCNGC 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 3 cut(s) 88, 197, 257
HhaI GCGC 2 cut(s) 115, 302
Hin1II CATG 2 cut(s) 130, 195
Hin6I GCGC 2 cut(s) 113, 300
HinP1I GCGC 2 cut(s) 113, 300
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 273
Hpy8I GTNNAC 1 cut(s) 273
HpyAV CCTTC 3 cut(s) 41, 78, 184
HpyCH4III ACNGT 4 cut(s) 38, 104, 189, 203
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 4 cut(s) 64, 118, 213, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
HpyF3I CTNAG 2 cut(s) 240, 303
HpySE526I ACGT 1 cut(s) 269
Hsp92II CATG 2 cut(s) 130, 195
HspAI GCGC 2 cut(s) 113, 300
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 5 cut(s) 6, 50, 106, 239, 261
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 124
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 1 cut(s) 312
MboII GAAGA 1 cut(s) 228
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 3 cut(s) 75, 106, 230
MluNI TGGCCA 1 cut(s) 257
MnlI CCTC 1 cut(s) 165
Mox20I TGGCCA 1 cut(s) 257
Mph1103I ATGCAT 1 cut(s) 215
MscI TGGCCA 1 cut(s) 257
Msp20I TGGCCA 1 cut(s) 257
Mva1269I GAATGC 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 306
NcoI CCATGG 1 cut(s) 126
NlaIII CATG 2 cut(s) 130, 195
NmuCI GTSAC 1 cut(s) 312
NsiI ATGCAT 1 cut(s) 215
PctI GAATGC 1 cut(s) 244
PkrI GCNGC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 123, 195
SatI GCNGC 1 cut(s) 116
Sau96I GGNCC 2 cut(s) 123, 195
SetI ASST 3 cut(s) 125, 226, 272
SfaNI GCATC 1 cut(s) 124
SinI GGWCC 1 cut(s) 123
Sse9I AATT 3 cut(s) 75, 106, 230
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 4 cut(s) 38, 104, 189, 203
TaiI ACGT 1 cut(s) 272
TasI AATT 3 cut(s) 75, 106, 230
TscAI CASTG 3 cut(s) 41, 280, 311
TseFI GTSAC 1 cut(s) 312
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 312
TspRI CASTG 3 cut(s) 41, 280, 311
VpaK11BI GGWCC 1 cut(s) 123
XapI RAATTY 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.