FvH4_1g01640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001210
Physical Location & Seq
Forward (+)
873836 .. 874162
327 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g01640.t1

Sequence Viewer

Length: 327 bp
ATGACTACCTTTGGAGTTTCTGGTACGGTGTTCCGGTGTGTGTTTGAAGGAAGCCTGTCAATACAGGACACGGAAATTGAGCGCAGGCCATACCATAAGAACTGCAACTGCGCGCTCCACAATTCCAAGGGTGGTCCTTGCTCCAATGCTTGTGCACAAAGGAACATTTCCTTCCCCAAGAAACACTCATGGACGGATAGCTCCTTATGCATGTCAGCAGCAACTTCCAAATTGTCTTCTCTGCATTGTCTTCCCGGAAACACATCCATGTCCACTGGAAACAGAGAAAATGGGAATGGAGTTCATTCCTTGTCACATAGACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.7

Weight (kDa)

8.99

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 113
AfaI GTAC 1 cut(s) 25
AgsI TTSAA 1 cut(s) 47
AluBI AGCT 1 cut(s) 201
AluI AGCT 1 cut(s) 201
Alw21I GWGCWC 1 cut(s) 157
Alw44I GTGCAC 1 cut(s) 153
AoxI GGCC 1 cut(s) 86
ApaLI GTGCAC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 218
AspLEI GCGC 3 cut(s) 84, 113, 115
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 157
BbsI GAAGAC 2 cut(s) 228, 242
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 230
BcnI CCSGG 1 cut(s) 255
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 255
BpiI GAAGAC 2 cut(s) 228, 242
BpuMI CCSGG 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 33
Bse1I ACTGG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 280
BsePI GCGCGC 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 157
BseXI GCAGC 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 157
BsiSI CCGG 2 cut(s) 34, 255
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 157
BspANI GGCC 1 cut(s) 88
BspFNI CGCG 1 cut(s) 113
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 126
BssHII GCGCGC 1 cut(s) 111
BssT1I CCWWGG 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 86, 113
BstF5I GGATG 1 cut(s) 263
BstFNI CGCG 1 cut(s) 113
BstHHI GCGC 3 cut(s) 84, 113, 115
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 157
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 230
BstV2I GAAGAC 2 cut(s) 228, 242
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 86, 113
CfoI GCGC 3 cut(s) 84, 113, 115
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 24
CviAII CATG 3 cut(s) 189, 211, 268
CviJI RGCY 3 cut(s) 54, 88, 201
CviKI_1 RGCY 3 cut(s) 54, 88, 201
CviQI GTAC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 126
EcoT22I ATGCAT 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 3 cut(s) 192, 214, 271
FaiI YATR 7 cut(s) 91, 96, 190, 208, 212, 269, 318
FatI CATG 3 cut(s) 188, 210, 267
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 219
GlaI GCGC 3 cut(s) 83, 112, 114
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 88
HapII CCGG 2 cut(s) 34, 255
HhaI GCGC 3 cut(s) 84, 113, 115
Hin1II CATG 3 cut(s) 192, 214, 271
Hin6I GCGC 3 cut(s) 82, 111, 113
HinP1I GCGC 3 cut(s) 82, 111, 113
HpaII CCGG 2 cut(s) 34, 255
Hpy166II GTNNAC 2 cut(s) 155, 273
Hpy8I GTNNAC 2 cut(s) 155, 273
HpyAV CCTTC 2 cut(s) 41, 181
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 4 cut(s) 105, 155, 210, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
Hsp92II CATG 3 cut(s) 192, 214, 271
HspAI GCGC 3 cut(s) 82, 111, 113
LmnI GCTCC 3 cut(s) 120, 146, 206
LpnPI CCDG 7 cut(s) 6, 47, 50, 68, 70, 261, 268
Lsp1109I GCAGC 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 312
MboII GAAGA 2 cut(s) 228, 242
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 3 cut(s) 75, 121, 230
Mph1103I ATGCAT 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 2 cut(s) 34, 255
MspR9I CCNGG 1 cut(s) 255
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 207
NciI CCSGG 1 cut(s) 255
NlaIII CATG 3 cut(s) 192, 214, 271
NmuCI GTSAC 1 cut(s) 312
NsiI ATGCAT 1 cut(s) 212
NspI RCATGY 1 cut(s) 214
PauI GCGCGC 1 cut(s) 111
PfoI TCCNGGA 1 cut(s) 253
PkrI GCNGC 1 cut(s) 220
PspPI GGNCC 1 cut(s) 134
PteI GCGCGC 1 cut(s) 111
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 266
SatI GCNGC 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 157
SetI ASST 2 cut(s) 11, 203
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 266
Sse9I AATT 3 cut(s) 75, 121, 230
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 28
TasI AATT 3 cut(s) 75, 121, 230
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 312
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 312
TspDTI ATGAA 1 cut(s) 293
TspGWI ACGGA 2 cut(s) 86, 209
TspRI CASTG 1 cut(s) 280
VneI GTGCAC 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 134
XceI RCATGY 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.