Rh2BG018600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001210
Physical Location & Seq
Forward (+)
1369364 .. 1369627
264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG018600.1

Sequence Viewer

Length: 264 bp
ATGAGTACCTTTGGAGTTTCTGGTATGATGTTTCAGTATGTGTTTGAAGAAAGCCTATCAATGCAGGGCACTGAGATTGAGCGAAGACCGTACCATAAGAACTGCAATTGTGTGCTGCACAAGTCCAAGGGTAGTGCTTGCTCCAATGCTGATCCTCAGCGAAGGAACATTTCCTTCTCCAAGAAACAGTCCTGGAGCAACACTTCCTTGTGCATATCAGCCACAGTTCCTTCCAAATTCTCTTCATCCAAATCCTCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.7

Weight (kDa)

9.46

Isoelectric Point (pI)

79.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 2 cut(s) 7, 92
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 191
AlwI GGATC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 91
BbvCI CCTCAGC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 102
BciT130I CCWGG 1 cut(s) 193
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
Bme1390I CCNGG 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 91
BpmI CTGGAG 1 cut(s) 214
Bpu10I CCTNAGC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 126
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 245
BseMII CTCAG 2 cut(s) 63, 170
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 151
BspCNI CTCAG 2 cut(s) 64, 169
BspPI GGATC 1 cut(s) 146
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 3 cut(s) 90, 189, 226
Bst6I CTCTTC 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 139
BstDEI CTNAG 2 cut(s) 72, 156
BstF5I GGATG 1 cut(s) 245
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstNI CCWGG 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 191
BstSLI GKGCMC 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 102
BstV2I GAAGAC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 6, 91
CviJI RGCY 2 cut(s) 54, 221
CviKI_1 RGCY 2 cut(s) 54, 221
CviQI GTAC 2 cut(s) 6, 91
DdeI CTNAG 2 cut(s) 72, 156
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Eco130I CCWWGG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaiI YATR 4 cut(s) 26, 39, 96, 215
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 214
HpyAV CCTTC 3 cut(s) 156, 184, 240
HpyCH4III ACNGT 3 cut(s) 90, 189, 226
HpyCH4V TGCA 4 cut(s) 64, 105, 118, 213
HpyF3I CTNAG 2 cut(s) 72, 156
Kzo9I GATC 1 cut(s) 151
LmnI GCTCC 2 cut(s) 146, 195
LpnPI CCDG 4 cut(s) 6, 50, 178, 205
Lsp1109I GCAGC 1 cut(s) 102
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 3 cut(s) 59, 96, 234
MfeI CAATTG 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 2 cut(s) 106, 236
MnlI CCTC 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 193
MunI CAATTG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 193
NdeII GATC 1 cut(s) 151
PfoI TCCNGGA 1 cut(s) 191
PkrI GCNGC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
RsaI GTAC 2 cut(s) 7, 92
RsaNI GTAC 2 cut(s) 6, 91
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 1 cut(s) 151
ScrFI CCNGG 1 cut(s) 193
SduI GDGCHC 1 cut(s) 71
SetI ASST 1 cut(s) 11
SgeI CNNG 9 cut(s) 33, 77, 133, 139, 150, 193, 204, 205, 220
Sse9I AATT 2 cut(s) 106, 236
StyD4I CCNGG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 3 cut(s) 90, 189, 226
TasI AATT 2 cut(s) 106, 236
TscAI CASTG 1 cut(s) 76
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 234
TspRI CASTG 1 cut(s) 76
XapI RAATTY 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.