Rroxscaffold_2G00154410

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
91014247 .. 91042147
27901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154410.1

Sequence Viewer

Length: 327 bp
ATGAATACCTTGGGAGCCTCTGGGATGATGTTTCAGTGTGTGCTTGAAGGAAGCATATCAATGCATGACACTGAGATTGAGAGAAGGCCATACCACAAAAATTGTAATTGTGCACTACACAAGTCTAAAGGAAGTGTTTGCTCCAATGCTTGCCCTCAACAAAGAAACATTTCCTTCCCCAAGAAGCAATCATGGATGGATTGTTCATTGTCCATGTCAGCAACTTCCAAATTCTGTTTACAGGAGTCTCTTCCTGGCAACACATCCACATCCACTGGAAACAGAGAAAGTGGGAATGGAGTTCATTCCTTGTCTCATAGACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.84

Weight (kDa)

8.78

Isoelectric Point (pI)

66.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 230
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 253
AloI GAACNNNNNNTCC 2 cut(s) 187, 219
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 2 cut(s) 252, 318
Alw44I GTGCAC 1 cut(s) 111
AoxI GGCC 1 cut(s) 86
ApaLI GTGCAC 1 cut(s) 111
ApoI RAATTY 1 cut(s) 230
Asp700I GAANNNNTTC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 115
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 252, 318
Bme1390I CCNGG 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 4 cut(s) 30, 201, 263, 269
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 280
BseSI GKGCMC 1 cut(s) 115
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 115
BsmAI GTCTC 2 cut(s) 252, 318
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 115
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 16
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 255
Bst6I CTCTTC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 1 cut(s) 72
BstF5I GGATG 4 cut(s) 30, 201, 263, 269
BstMAI GTCTC 2 cut(s) 252, 318
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSLI GKGCMC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 4 cut(s) 30, 201, 263, 269
BtsIMutI CAGTG 3 cut(s) 41, 69, 273
Cac8I GCNNGC 1 cut(s) 151
CspCI CAANNNNNGTGG 2 cut(s) 83, 118
CviAII CATG 3 cut(s) 65, 192, 214
CviJI RGCY 2 cut(s) 17, 88
CviKI_1 RGCY 2 cut(s) 17, 88
DdeI CTNAG 1 cut(s) 72
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 9
EcoT22I ATGCAT 1 cut(s) 66
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 3 cut(s) 68, 195, 217
FaiI YATR 6 cut(s) 56, 66, 91, 193, 215, 318
FatI CATG 3 cut(s) 64, 191, 213
FokI GGATG 4 cut(s) 37, 208, 250, 256
HaeIII GGCC 1 cut(s) 88
Hin1II CATG 3 cut(s) 68, 195, 217
HinfI GANTC 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 113, 239
Hpy8I GTNNAC 2 cut(s) 113, 239
HpyAV CCTTC 3 cut(s) 41, 78, 184
HpyCH4V TGCA 2 cut(s) 64, 113
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 3 cut(s) 68, 195, 217
LmnI GCTCC 2 cut(s) 14, 146
LpnPI CCDG 5 cut(s) 6, 227, 240, 261, 267
MboII GAAGA 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 3 cut(s) 100, 106, 230
MlyI GAGTC 1 cut(s) 254
MnlI CCTC 2 cut(s) 28, 165
Mph1103I ATGCAT 1 cut(s) 66
MroXI GAANNNNTTC 1 cut(s) 169
MslI CAYNNNNRTG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
NlaIII CATG 3 cut(s) 68, 195, 217
NlaIV GGNNCC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 169
PleI GAGTC 1 cut(s) 253
PpsI GAGTC 1 cut(s) 253
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 16
RseI CAYNNNNRTG 1 cut(s) 59
SchI GAGTC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 1 cut(s) 115
SetI ASST 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 3 cut(s) 100, 106, 230
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 9
TasI AATT 3 cut(s) 100, 106, 230
TscAI CASTG 3 cut(s) 41, 76, 280
TspDTI ATGAA 3 cut(s) 17, 195, 293
TspRI CASTG 3 cut(s) 41, 76, 280
VneI GTGCAC 1 cut(s) 111
XapI RAATTY 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 169
Zsp2I ATGCAT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.