RchiOBHm_Chr2g0086641

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001210
Physical Location & Seq
Forward (+)
1703167 .. 1704701
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46215

Sequence Viewer

Length: 396 bp
ATGGCAACTAAGATGATGCTTCAGTGTGTCTTAGAAGGAAGCATATCAGTGCATGACATGGAGGTTGAGCATAGGCCATACCACCGTAATTGCAGCTGTGCAATGCACAAGATGAAGGGTAGTTGCTCCAACGACGCTTGCTCTCATCAGTCGAATATTTCGTTCCCCAGGAAACAGCCTCAATCTTGTTGCTGGCTCAACACTACGGAACAAAGAAGACTGAGTGCACCATTTCATGCAAAGTACACAAACATACATAGCTCAGGCTGCTCAGCAGTCAGCACAGCACAGCAAGAAGAAAAGAGGGGAAACCGTGGAACTAAAGCATGTCATATCTACCTGACAGAAAGCTCGGAGCAAGATGATTTTCTCAGTACCCTGTATAGTTTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.86

Weight (kDa)

8.1

Isoelectric Point (pI)

90.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 5
AfaI GTAC 2 cut(s) 245, 376
AjnI CCWGG 1 cut(s) 167
AluBI AGCT 3 cut(s) 96, 261, 351
AluI AGCT 3 cut(s) 96, 261, 351
Alw21I GWGCWC 1 cut(s) 229
Alw44I GTGCAC 1 cut(s) 225
AoxI GGCC 1 cut(s) 74
ApaLI GTGCAC 1 cut(s) 225
ApeKI GCWGC 2 cut(s) 93, 267
BaeGI GKGCMC 1 cut(s) 229
BarI GAAGNNNNNNTAC 1 cut(s) 374
BbsI GAAGAC 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 105, 254
BciT130I CCWGG 1 cut(s) 169
BfaI CTAG 1 cut(s) 394
BisI GCNGC 2 cut(s) 94, 268
BlpI GCTNAGC 1 cut(s) 271
BlsI GCNGC 2 cut(s) 95, 269
Bme1390I CCNGG 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 169
BmsI GCATC 1 cut(s) 6
BpiI GAAGAC 1 cut(s) 223
Bpu10I CCTNAGC 1 cut(s) 262
Bpu1102I GCTNAGC 1 cut(s) 271
BsaJI CCNNGG 2 cut(s) 167, 313
Bse3DI GCAATG 1 cut(s) 108
BseBI CCWGG 1 cut(s) 169
BseDI CCNNGG 2 cut(s) 167, 313
BseMI GCAATG 1 cut(s) 108
BseMII CTCAG 4 cut(s) 212, 276, 285, 385
BseSI GKGCMC 1 cut(s) 229
BseXI GCAGC 2 cut(s) 105, 254
BshFI GGCC 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 229
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 229
Bsp1720I GCTNAGC 1 cut(s) 271
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 4 cut(s) 213, 275, 284, 384
BsrDI GCAATG 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 167, 313
Bst2UI CCWGG 1 cut(s) 169
Bst4CI ACNGT 2 cut(s) 86, 314
BstC8I GCNNGC 2 cut(s) 139, 194
BstDEI CTNAG 6 cut(s) 9, 31, 221, 262, 271, 371
BstDSI CCRYGG 1 cut(s) 313
BstMWI GCNNNNNNNGC 1 cut(s) 267
BstNI CCWGG 1 cut(s) 169
BstNSI RCATGY 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 167
BstSLI GKGCMC 1 cut(s) 229
BstV1I GCAGC 2 cut(s) 105, 254
BstV2I GAAGAC 1 cut(s) 223
BsuRI GGCC 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 29, 54
Cac8I GCNNGC 2 cut(s) 139, 194
CseI GACGC 1 cut(s) 143
Csp6I GTAC 2 cut(s) 244, 375
CspCI CAANNNNNGTGG 2 cut(s) 71, 106
CviAII CATG 4 cut(s) 53, 58, 236, 327
CviJI RGCY 7 cut(s) 76, 96, 178, 196, 261, 267, 351
CviKI_1 RGCY 7 cut(s) 76, 96, 178, 196, 261, 267, 351
CviQI GTAC 2 cut(s) 244, 375
DdeI CTNAG 6 cut(s) 9, 31, 221, 262, 271, 371
Eco57I CTGAAG 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 167
FaeI CATG 4 cut(s) 56, 61, 239, 330
FatI CATG 4 cut(s) 52, 57, 235, 326
Fnu4HI GCNGC 2 cut(s) 94, 268
Fsp4HI GCNGC 2 cut(s) 94, 268
FspBI CTAG 1 cut(s) 394
GluI GCNGC 2 cut(s) 94, 268
HaeIII GGCC 1 cut(s) 76
HgaI GACGC 1 cut(s) 143
Hin1II CATG 4 cut(s) 56, 61, 239, 330
Hpy166II GTNNAC 2 cut(s) 227, 246
Hpy188I TCNGA 1 cut(s) 355
Hpy8I GTNNAC 2 cut(s) 227, 246
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 29, 109
HpyCH4III ACNGT 2 cut(s) 86, 314
HpyCH4V TGCA 6 cut(s) 52, 93, 101, 106, 227, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 267
HpyF3I CTNAG 6 cut(s) 9, 31, 221, 262, 271, 371
Hsp92II CATG 4 cut(s) 56, 61, 239, 330
LmnI GCTCC 2 cut(s) 131, 355
LpnPI CCDG 6 cut(s) 154, 178, 181, 249, 353, 392
Lsp1109I GCAGC 2 cut(s) 105, 254
LweI GCATC 1 cut(s) 6
MaeI CTAG 1 cut(s) 394
MboII GAAGA 3 cut(s) 228, 308, 382
MhlI GDGCHC 1 cut(s) 229
MluCI AATT 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 3 cut(s) 55, 189, 297
MslI CAYNNNNRTG 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 96
MspR9I CCNGG 1 cut(s) 169
MvaI CCWGG 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 267
NlaIII CATG 4 cut(s) 56, 61, 239, 330
NspI RCATGY 1 cut(s) 330
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PkrI GCNGC 2 cut(s) 95, 269
Psp6I CCWGG 1 cut(s) 167
PspGI CCWGG 1 cut(s) 167
PvuII CAGCTG 1 cut(s) 96
RsaI GTAC 2 cut(s) 245, 376
RsaNI GTAC 2 cut(s) 244, 375
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 2 cut(s) 94, 268
ScrFI CCNGG 1 cut(s) 169
SduI GDGCHC 1 cut(s) 229
SetI ASST 5 cut(s) 66, 98, 263, 342, 353
SfaNI GCATC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 88
SspI AATATT 1 cut(s) 157
SspMI CTAG 1 cut(s) 394
StyD4I CCNGG 1 cut(s) 167
TaaI ACNGT 2 cut(s) 86, 314
TaqI TCGA 1 cut(s) 152
TasI AATT 1 cut(s) 88
TatI WGTACW 1 cut(s) 243
TscAI CASTG 2 cut(s) 29, 54
TseI GCWGC 2 cut(s) 93, 267
TspDTI ATGAA 2 cut(s) 128, 224
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 2 cut(s) 29, 54
VneI GTGCAC 1 cut(s) 225
XceI RCATGY 1 cut(s) 330
XspI CTAG 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.