Rroxscaffold_2G00154390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001210
Physical Location & Seq
Forward (+)
90988681 .. 90989010
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154390.1

Sequence Viewer

Length: 330 bp
ATGACTACCTTGGGAGTTTCAGGGATGATGTTTCAGTGTGTTTTTGAAGGAAGCCTATCAATGCAGGACACAGAAATTGAGTGCAGGCCGTACCATAAAAACTGCAATTGTGCAATGCACAAGTCAAAAGGGGCTGTTTGCTCCAATGGTTGTCAACAAAGGAACATTTCCTTCCCCAAGAAACAATTATGGACAGATGGCTCCTTGTGCATGTCAGCAGCAACTTCCAAAATCTCTTCTTCTCAGCATTCTCTTTCAGGCAACGCATCCATGTCCAGAACTGGAAACAGAGAAAGTATGAATGAGACTCATTCCTTGACACATAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.93

Weight (kDa)

8.77

Isoelectric Point (pI)

58.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 92
AgsI TTSAA 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 299
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 230
BccI CCATC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 299
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 202
BmsI GCATC 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 9
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 2 cut(s) 30, 266
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 286
BseXI GCAGC 1 cut(s) 230
BsgI GTGCAG 1 cut(s) 103
BshFI GGCC 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 1 cut(s) 88
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 9
Bst6I CTCTTC 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 30, 266
BstMAI GTCTC 1 cut(s) 299
BstMWI GCNNNNNNNGC 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 214
BstV1I GCAGC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 2 cut(s) 30, 266
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 91
CviAII CATG 2 cut(s) 211, 271
CviJI RGCY 4 cut(s) 54, 88, 134, 201
CviKI_1 RGCY 4 cut(s) 54, 88, 134, 201
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 2 cut(s) 214, 274
FaiI YATR 6 cut(s) 96, 190, 212, 272, 299, 324
FatI CATG 2 cut(s) 210, 270
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 2 cut(s) 37, 253
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 88
Hin1II CATG 2 cut(s) 214, 274
HincII GTYRAC 1 cut(s) 155
HindII GTYRAC 1 cut(s) 155
HinfI GANTC 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 155
HpyAV CCTTC 2 cut(s) 41, 181
HpyCH4V TGCA 6 cut(s) 64, 84, 105, 113, 118, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 207
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 2 cut(s) 214, 274
LmnI GCTCC 2 cut(s) 146, 206
LpnPI CCDG 6 cut(s) 6, 50, 70, 243, 267, 289
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 1 cut(s) 275
MboII GAAGA 2 cut(s) 228, 231
MfeI CAATTG 1 cut(s) 106
MluCI AATT 3 cut(s) 75, 106, 185
MlyI GAGTC 1 cut(s) 301
MslI CAYNNNNRTG 1 cut(s) 325
MunI CAATTG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 247
MwoI GCNNNNNNNGC 1 cut(s) 207
NlaIII CATG 2 cut(s) 214, 274
NlaIV GGNNCC 1 cut(s) 202
NspI RCATGY 1 cut(s) 214
PctI GAATGC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 202
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 325
SatI GCNGC 1 cut(s) 219
SchI GAGTC 1 cut(s) 301
SetI ASST 1 cut(s) 11
SfaNI GCATC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 325
Sse9I AATT 3 cut(s) 75, 106, 185
StyI CCWWGG 1 cut(s) 9
TasI AATT 3 cut(s) 75, 106, 185
TscAI CASTG 1 cut(s) 41
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 1 cut(s) 41
XceI RCATGY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.