FvH4_1g23711

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0001406
Physical Location & Seq
Reverse (-)
15560947 .. 15562836
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23711.t1

Sequence Viewer

Length: 720 bp
ATGGCGGCGAATGGAGCGTTGACGGCTTCTCTCTCATCGATCATCATAGGCGGCCTTGCGGCGGCGATCTCTAGCTTCTGGCGGCTGAAGGACAAGGCGTTGATCCACAAGGAGAAAAACGGTATTTTCATTTTCCAATTCAAGGATAAGGAAGAGAAACTCTGGATTCTCATTGGAAGTCCATGGTTTTTCAACAATGGGATGTTGTTGTTGGCGGAATATGACGGCATTGGAGAGCTTCAGGACGTTCCTTTGAATAATCTAGAGAGGACAGCGTTCAACGCATTCGGATTGTGCATGATGTACGACGGTAGGGAATTGAAATTGAATTTTGAAAAATGTAAGGGACTTCGTAAGGGTTGTGGACCAGTGGCGGATACACATGAAGGGCTATATAGGCTCAAGCTTAGACCGTTTTTTGTGCCAAAACCCTCAACTACCAATCCCATGAAGGGCATCACCGAGACCCTAAGTTTCCAATCACAGCATACCGAGCCTGCCGCCACCATCGGAAGAAATGGACTGATCGGATGGTCGCCCCTGCTCAAATTGACCCTCCCAAACCAAGGAGATCGGCCGTTAGAGAAAATTATTTGTGAAACAAAAGTGGGAGGTCAGATATGGAGGTGGAGGTTCGAGGTGGAGTTTATGGGGAAGGGGATGAGAATGATGAGAGGTGAATTGGGGTATACATGTGAGGAAGAGAGACAAGAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

27.0

Weight (kDa)

8.76

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 20 - 74 2.2e-06 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 689
AciI CCGC 8 cut(s) 5, 51, 59, 62, 82, 215, 374, 501
AclWI GGATC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 575
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 2 cut(s) 107, 224
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 4 cut(s) 61, 142, 452, 566
AflIII ACRYGT 1 cut(s) 692
AgsI TTSAA 7 cut(s) 142, 193, 256, 280, 322, 328, 335
AluBI AGCT 4 cut(s) 75, 238, 406, 715
AluI AGCT 4 cut(s) 75, 238, 406, 715
Alw21I GWGCWC 1 cut(s) 717
Alw26I GTCTC 2 cut(s) 458, 700
AlwI GGATC 1 cut(s) 97
AoxI GGCC 2 cut(s) 52, 575
ApoI RAATTY 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 451, 689
AvaII GGWCC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 717
Bbv12I GWGCWC 1 cut(s) 717
BccI CCATC 2 cut(s) 515, 525
BceAI ACGGC 3 cut(s) 39, 241, 562
BciVI GTATCC 1 cut(s) 370
BcoDI GTCTC 2 cut(s) 458, 700
BfaI CTAG 3 cut(s) 72, 263, 718
BfuI GTATCC 1 cut(s) 370
BisI GCNGC 6 cut(s) 6, 52, 60, 63, 83, 501
BlsI GCNGC 6 cut(s) 7, 53, 61, 64, 84, 502
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmsI GCATC 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 386
Bsa29I ATCGAT 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 458
BsaJI CCNNGG 2 cut(s) 182, 565
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 142, 452, 566
Bse1I ACTGG 1 cut(s) 368
BseCI ATCGAT 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 182, 565
BseGI GGATG 3 cut(s) 207, 536, 666
BseLI CCNNNNNNNGG 4 cut(s) 61, 142, 452, 566
BseNI ACTGG 1 cut(s) 368
BseX3I CGGCCG 1 cut(s) 575
Bsh1285I CGRYCG 1 cut(s) 578
BshFI GGCC 2 cut(s) 54, 577
BshVI ATCGAT 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 578
BsiHKAI GWGCWC 1 cut(s) 717
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 4 cut(s) 61, 142, 452, 566
BsmAI GTCTC 2 cut(s) 458, 700
BsmFI GGGAC 1 cut(s) 360
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 2 cut(s) 54, 577
Bso31I GGTCTC 1 cut(s) 458
Bsp1286I GDGCHC 1 cut(s) 717
Bsp143I GATC 5 cut(s) 39, 66, 102, 525, 571
Bsp19I CCATGG 1 cut(s) 182
BspACI CCGC 8 cut(s) 5, 51, 59, 62, 82, 215, 374, 501
BspANI GGCC 2 cut(s) 54, 577
BspDI ATCGAT 1 cut(s) 38
BspPI GGATC 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 458
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 2 cut(s) 182, 565
BssMI GATC 5 cut(s) 39, 66, 102, 525, 571
BssNAI GTATAC 1 cut(s) 690
BssT1I CCWWGG 2 cut(s) 182, 565
Bst1107I GTATAC 1 cut(s) 690
Bst4CI ACNGT 3 cut(s) 122, 311, 414
Bst6I CTCTTC 2 cut(s) 147, 696
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 2 cut(s) 407, 470
BstDSI CCRYGG 1 cut(s) 182
BstF5I GGATG 3 cut(s) 207, 536, 666
BstKTI GATC 5 cut(s) 42, 69, 105, 528, 574
BstMAI GTCTC 2 cut(s) 458, 700
BstMBI GATC 5 cut(s) 39, 66, 102, 525, 571
BstMCI CGRYCG 1 cut(s) 578
BstMWI GCNNNNNNNGC 5 cut(s) 14, 23, 281, 397, 493
BstNSI RCATGY 1 cut(s) 696
BstZ17I GTATAC 1 cut(s) 690
BstZI CGGCCG 1 cut(s) 575
Bsu15I ATCGAT 1 cut(s) 38
BsuI GTATCC 1 cut(s) 370
BsuRI GGCC 2 cut(s) 54, 577
BsuTUI ATCGAT 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 182
BtsCI GGATG 3 cut(s) 207, 536, 666
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 1 cut(s) 498
Cfr13I GGNCC 1 cut(s) 365
ClaI ATCGAT 1 cut(s) 38
Csp6I GTAC 1 cut(s) 304
CviAII CATG 5 cut(s) 183, 298, 383, 448, 693
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 2 cut(s) 407, 470
DpnI GATC 5 cut(s) 41, 68, 104, 527, 573
DpnII GATC 5 cut(s) 39, 66, 102, 525, 571
EaeI YGGCCR 1 cut(s) 575
EagI CGGCCG 1 cut(s) 575
Eam1104I CTCTTC 2 cut(s) 147, 696
EarI CTCTTC 2 cut(s) 147, 696
EciI GGCGGA 2 cut(s) 230, 389
Ecl136II GAGCTC 1 cut(s) 715
EclXI CGGCCG 1 cut(s) 575
Eco130I CCWWGG 2 cut(s) 182, 565
Eco24I GRGCYC 1 cut(s) 717
Eco31I GGTCTC 1 cut(s) 458
Eco47I GGWCC 1 cut(s) 365
Eco52I CGGCCG 1 cut(s) 575
Eco53kI GAGCTC 1 cut(s) 715
Eco57I CTGAAG 2 cut(s) 107, 224
EcoICRI GAGCTC 1 cut(s) 715
EcoT14I CCWWGG 2 cut(s) 182, 565
EcoT38I GRGCYC 1 cut(s) 717
ErhI CCWWGG 2 cut(s) 182, 565
FaeI CATG 5 cut(s) 186, 301, 386, 451, 696
FaqI GGGAC 1 cut(s) 360
FatI CATG 5 cut(s) 182, 297, 382, 447, 692
FblI GTMKAC 1 cut(s) 689
Fnu4HI GCNGC 6 cut(s) 6, 52, 60, 63, 83, 501
FokI GGATG 3 cut(s) 214, 543, 673
FriOI GRGCYC 1 cut(s) 717
Fsp4HI GCNGC 6 cut(s) 6, 52, 60, 63, 83, 501
FspBI CTAG 3 cut(s) 72, 263, 718
GluI GCNGC 6 cut(s) 6, 52, 60, 63, 83, 501
HaeIII GGCC 2 cut(s) 54, 577
Hin1II CATG 5 cut(s) 186, 301, 386, 451, 696
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 1 cut(s) 166
HphI GGTGA 2 cut(s) 451, 689
Hpy166II GTNNAC 3 cut(s) 21, 365, 690
Hpy188I TCNGA 4 cut(s) 290, 512, 530, 618
Hpy188III TCNNGA 3 cut(s) 163, 242, 263
Hpy8I GTNNAC 3 cut(s) 21, 365, 690
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 4 cut(s) 82, 380, 445, 649
HpyCH4III ACNGT 3 cut(s) 122, 311, 414
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 297
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 23, 281, 397, 493
HpyF3I CTNAG 2 cut(s) 407, 470
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 5 cut(s) 186, 301, 386, 451, 696
Kzo9I GATC 5 cut(s) 39, 66, 102, 525, 571
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 6 cut(s) 64, 148, 227, 381, 510, 554
LweI GCATC 1 cut(s) 465
MaeI CTAG 3 cut(s) 72, 263, 718
MaeII ACGT 1 cut(s) 246
MalI GATC 5 cut(s) 41, 68, 104, 527, 573
MboI GATC 5 cut(s) 39, 66, 102, 525, 571
MboII GAAGA 3 cut(s) 164, 525, 713
MhlI GDGCHC 1 cut(s) 717
MluCI AATT 7 cut(s) 137, 317, 323, 328, 548, 588, 680
MnlI CCTC 9 cut(s) 261, 442, 566, 605, 618, 624, 631, 668, 691
Mva1269I GAATGC 1 cut(s) 284
MwoI GCNNNNNNNGC 5 cut(s) 14, 23, 281, 397, 493
NcoI CCATGG 1 cut(s) 182
NdeII GATC 5 cut(s) 39, 66, 102, 525, 571
NlaIII CATG 5 cut(s) 186, 301, 386, 451, 696
NspI RCATGY 1 cut(s) 696
PciI ACATGT 1 cut(s) 692
PctI GAATGC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 6 cut(s) 7, 53, 61, 64, 84, 502
PscI ACATGT 1 cut(s) 692
Psp124BI GAGCTC 1 cut(s) 717
PspPI GGNCC 1 cut(s) 365
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SacI GAGCTC 1 cut(s) 717
SatI GCNGC 6 cut(s) 6, 52, 60, 63, 83, 501
Sau3AI GATC 5 cut(s) 39, 66, 102, 525, 571
Sau96I GGNCC 1 cut(s) 365
SduI GDGCHC 1 cut(s) 717
SfaNI GCATC 1 cut(s) 465
SinI GGWCC 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 7 cut(s) 137, 317, 323, 328, 548, 588, 680
SsiI CCGC 8 cut(s) 5, 51, 59, 62, 82, 215, 374, 501
SspMI CTAG 3 cut(s) 72, 263, 718
SstI GAGCTC 1 cut(s) 717
StyI CCWWGG 2 cut(s) 182, 565
TaaI ACNGT 3 cut(s) 122, 311, 414
TaiI ACGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 38, 636
TasI AATT 7 cut(s) 137, 317, 323, 328, 548, 588, 680
TauI GCSGC 6 cut(s) 8, 54, 62, 65, 85, 503
TfiI GAWTC 1 cut(s) 166
TscAI CASTG 1 cut(s) 375
TspDTI ATGAA 3 cut(s) 118, 399, 464
TspRI CASTG 1 cut(s) 375
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 328
XbaI TCTAGA 1 cut(s) 262
XceI RCATGY 1 cut(s) 696
XmiI GTMKAC 1 cut(s) 689
XspI CTAG 3 cut(s) 72, 263, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.