Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Reverse (-)

58700399 .. 58700698

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG373300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCTGGTGTTGAGGATGTGACTTCGAAGCTTGCTGTGGCCCTTGCTATTGGGGGAGATGACTTCCACAATGAGGATCCACCAGTGGAGTTGGCAGATCCAACCTATCACTGGTTGGTGGGGCGTATGGTCTTTGTGGATCAGACGAAAGGGGCGCCGCACAGGTTTATGGCCCAAATCGGACAGATCTGGCCTGTGGCTGACCATGGGTTGGTGATCCGTGAACGACTAAATAGGCGATTTCTCTTCCGCTTTGTTAATCCGACCGATAAGCAACGGGTTTTGGCTAAATCACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

11.19

Weight (kDa)

6.91

Isoelectric Point (pI)

27.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccB7I	CCANNNNNTGG	1 cut(s)	211
AciI	CCGC	2 cut(s)	158, 250
AclWI	GGATC	5 cut(s)	71, 84, 92, 147, 211
AcyI	GRCGYC	1 cut(s)	155
AfiI	CCNNNNNNNGG	3 cut(s)	73, 111, 211
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
AlwI	GGATC	5 cut(s)	71, 84, 92, 147, 211
AoxI	GGCC	3 cut(s)	39, 171, 191
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	40, 172
AsuHPI	GGTGA	1 cut(s)	226
AsuII	TTCGAA	1 cut(s)	26
BamHI	GGATCC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	154
BfmI	CTRYAG	1 cut(s)	296
BfoI	RGCGCY	1 cut(s)	158
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	40, 172
BmiI	GGNNCC	2 cut(s)	78, 156
Bpu14I	TTCGAA	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 111, 211
Bse1I	ACTGG	2 cut(s)	83, 116
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	3 cut(s)	73, 111, 211
BseNI	ACTGG	2 cut(s)	83, 116
Bsh1285I	CGRYCG	1 cut(s)	267
BshFI	GGCC	3 cut(s)	41, 173, 193
BshNI	GGYRCC	1 cut(s)	154
BsiEI	CGRYCG	1 cut(s)	267
BslI	CCNNNNNNNGG	3 cut(s)	73, 111, 211
BsnI	GGCC	3 cut(s)	41, 173, 193
Bsp119I	TTCGAA	1 cut(s)	26
Bsp143I	GATC	5 cut(s)	76, 97, 139, 186, 216
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	2 cut(s)	158, 250
BspANI	GGCC	3 cut(s)	41, 173, 193
BspLI	GGNNCC	2 cut(s)	78, 156
BspPI	GGATC	5 cut(s)	71, 84, 92, 147, 211
BspT104I	TTCGAA	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	83, 116
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	5 cut(s)	76, 97, 139, 186, 216
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	205
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	155
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	22
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	5 cut(s)	79, 100, 142, 189, 219
BstMBI	GATC	5 cut(s)	76, 97, 139, 186, 216
BstMCI	CGRYCG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	296
BstX2I	RGATCY	3 cut(s)	76, 97, 186
BstYI	RGATCY	3 cut(s)	76, 97, 186
BsuRI	GGCC	3 cut(s)	41, 173, 193
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	90, 109
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	40, 172
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	7 cut(s)	5, 31, 41, 173, 193, 200, 287
CviKI_1	RGCY	7 cut(s)	5, 31, 41, 173, 193, 200, 287
DinI	GGCGCC	1 cut(s)	156
DpnI	GATC	5 cut(s)	78, 99, 141, 188, 218
DpnII	GATC	5 cut(s)	76, 97, 139, 186, 216
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	205
EgeI	GGCGCC	1 cut(s)	156
EheI	GGCGCC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	209
FaiI	YATR	4 cut(s)	128, 170, 207, 298
FatI	CATG	1 cut(s)	205
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	158
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	1 cut(s)	158
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	3 cut(s)	41, 173, 193
HhaI	GCGC	1 cut(s)	157
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	29
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	3 cut(s)	144, 182, 264
Hpy8I	GTNNAC	1 cut(s)	224
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	1 cut(s)	209
HspAI	GCGC	1 cut(s)	155
KasI	GGCGCC	1 cut(s)	154
Kzo9I	GATC	5 cut(s)	76, 97, 139, 186, 216
LpnPI	CCDG	5 cut(s)	96, 97, 148, 175, 207
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	5 cut(s)	78, 99, 141, 188, 218
MboI	GATC	5 cut(s)	76, 97, 139, 186, 216
MboII	GAAGA	1 cut(s)	238
MflI	RGATCY	3 cut(s)	76, 97, 186
Mly113I	GGCGCC	1 cut(s)	155
MmeI	TCCRAC	2 cut(s)	125, 287
MnlI	CCTC	2 cut(s)	7, 67
MseI	TTAA	1 cut(s)	258
NarI	GGCGCC	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	5 cut(s)	76, 97, 139, 186, 216
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	2 cut(s)	78, 156
NmuCI	GTSAC	1 cut(s)	19
NspV	TTCGAA	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	1 cut(s)	159
PluTI	GGCGCC	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	78, 156
PspPI	GGNCC	2 cut(s)	40, 172
PsuI	RGATCY	3 cut(s)	76, 97, 186
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	5 cut(s)	76, 97, 139, 186, 216
Sau96I	GGNCC	2 cut(s)	40, 172
SetI	ASST	3 cut(s)	33, 107, 167
SfcI	CTRYAG	1 cut(s)	296
SfoI	GGCGCC	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	26
SsiI	CCGC	2 cut(s)	158, 250
SspDI	GGCGCC	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	205
TaqI	TCGA	1 cut(s)	26
TaqII	GACCGA	1 cut(s)	281
TauI	GCSGC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	2 cut(s)	90, 116
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	2 cut(s)	90, 116
Van91I	CCANNNNNTGG	1 cut(s)	211
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.